Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1510 ATGGAAGTGAGTTTGGATTTGAGTTTGGCCTTTGTCCCTAGAAGAACCGTTTGTGAGATTCTTGGCGATATTGCTAAGAGCAAAGATGGGTCTCGGAGAATGGCCACAATTGAGGACTTAGTGAAAAGGTTGGAAGATGAGAAGAAGAAGATTGAAGCATTCAAACCTATTAGTAAATTGAAAGAAGAGATAAAGGGGGGTGTGAGAATGAAAGATGAAGCCGTGGTTGAAGAGTTGATGAAACTTATGAAAACCAATTCTGAAGCAAATGGGTCTTTGATGATTGTGGGGAACGAAAGCAGTGACACGAAGAATTGGATGAACTCTGTTCAGCTATGGAACGTTGAAACCAAACAGAGGAATGAAGAGGGTGATCTATTTGTGCCCAGCAATCCAATTGAACAAAAAAACGACACCAACAAGAGTGTCTCAAAGACAGTGATGAAGGACAACAAGAAAATGTCACAGGTTCCTAGTCTTGGGTTGATGAGTCCTGCAGTGTTGGAATTGAATCATAGAAAAACAGAAAGTGGTTATGGACATGGTTCGTCCATGATTATTACAAGCTCGGTTGAAATTAAGGGTCATCATCAATCACAACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGATCTTCATCGGCGATTTGTTGATGCGCTTCAACAATTAGGGGGCCCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATTTTAAAAGACCTCAAGGTTCTTCAATTGGCCATGCTAACAGTGGCTTATGCAAGATGGCACAAGATAAATGTGGAGACGATAAATCTGGCTCTCCACAAGGTCCACTCTTCCTAGGAGGGTCTGGAAAAGGTCTTTCAAGCTCTGGACGCAATAGCATGGACACAGAAGGAGATGAGGAATCAGATTGCCGCAATTGGAAAGGTGGGATTCATCACCAATTGCAACCAGAAAGTGACGTTTTGTGA 1035 0.43 MEVSLDLSLAFVPRRTVCEILGDIAKSKDGSRRMATIEDLVKRLEDEKKKIEAFKPISKLKEEIKGGVRMKDEAVVEELMKLMKTNSEANGSLMIVGNESSDTKNWMNSVQLWNVETKQRNEEGDLFVPSNPIEQKNDTNKSVSKTVMKDNKKMSQVPSLGLMSPAVLELNHRKTESGYGHGSSMIITSSVEIKGHHQSQQPQQNPRKQRRCWSPDLHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFKRPQGSSIGHANSGLCKMAQDKCGDDKSGSPQGPLFLGGSGKGLSSSGRNSMDTEGDEESDCRNWKGGIHHQLQPESDVL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1510 344 MobiDBLite consensus disorder prediction 285 344 - -
Gso17g1510 344 MobiDBLite consensus disorder prediction 316 330 - -
Gso17g1510 344 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Gso17g1510 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Gso17g1510 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 334 IPR044787 GO:0003700|GO:0006355
Gso17g1510 344 Gene3D - 207 265 - -
Gso17g1510 344 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Gso17g1510 344 PANTHER TRANSCRIPTION FACTOR HHO5 1 334 - -
Gso17g1510 344 Coils Coil 34 54 - -
Gso17g1510 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1510 Gso-Chr17 19520200 19523304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1510 1 264 G2-like Transcription Factor Family AT4G37180 35.612 4.18e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso17g1510 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1510 - - gmx:100794220 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1510 17 19520200 19523304 Gso1g1576 1 52423221 52425441 PCT
Gso17g1510 17 19520200 19523304 Gso11g0500 11 4460240 4462356 PCT