Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1508 ATGTCAACATGCGGCGCATGCAAGTACCAACGGCGAAGGTGCTATTCGGATATTTGCATGTTCGCACCATACTTTCCAGCGGAGAACATCCAGCGGTTCGCGTGCGTGCACCATGTGTTTGGCGGTGGCAACGTAGGAAGCATGCTCAACATCACAAAGCCAAAGTTGCGGGGGTGGGTGGTGAAGACGTTGGCATACCAGGCAGAGGCACGTGTGAGGGACCCTGTGCATGGGTGCGTGGGCCTCATACGGGAGTTGGAAGAGAATCATCGCAAGGTGAAAGAGGACCTTGCCAAGGCCCAAATGGAGCTGGCCCGATACATGGGCCCGGAGTTTGTGAGAAAGCTGAGTCCCAATTATGGTGGTGAGTCTTCTTTGAAGGGTAAGTTTGTGGCACATTTGCAGCCGACAACAATGGAGCTTGACTTTGCTCCCTCTATTGCCATTGATGTTGATGATCTTGATAAGTGGGACCCTTTTCCACCATGGGAAACTAGTTTTCAGAATGTTGGTCCTTCTTCTTCACATGCACATGGTGAAGGTGGGAATAGGAAGGGTAAGGGTGTTGCTCCTTAA 576 0.5156 MSTCGACKYQRRRCYSDICMFAPYFPAENIQRFACVHHVFGGGNVGSMLNITKPKLRGWVVKTLAYQAEARVRDPVHGCVGLIRELEENHRKVKEDLAKAQMELARYMGPEFVRKLSPNYGGESSLKGKFVAHLQPTTMELDFAPSIAIDVDDLDKWDPFPPWETSFQNVGPSSSHAHGEGGNRKGKGVAP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1508 191 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Gso17g1508 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 2 123 - -
Gso17g1508 191 Coils Coil 83 103 - -
Gso17g1508 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 123 - -
Gso17g1508 191 MobiDBLite consensus disorder prediction 162 191 - -
Gso17g1508 191 ProSiteProfiles LOB domain profile. 2 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1508 Gso-Chr17 19475824 19476399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1508 2 113 AS2 family AT2G23660 49.107 2.23e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso17g1508 LOB 7.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1508 - - gmx:102663028 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1508 17 19475824 19476399 Gso1g1578 1 52439644 52443432 PCT
Gso17g1508 17 19475824 19476399 Gso11g0498 11 4444500 4448314 PCT