Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1484 ATGTCACAGCAGCAGCGTTCGACGCCGGCGCCGTTCTTGACGAAGACGTATCTGCTGGTGGATGACCCCGCCACCGACGACGTCGTTTCGTGGAGCGAAGGTGGCAATACCTTCGTCGTTTGGAAACACGCCGATTTCGCTAAGGACTTGCTTCCGAAGTACTTCAAGCATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGATTCCGAAAAACTGTTCCCGACAAATGGGAATTTGCCAATGAGTATTTCAAGCGAGGACAGACGGATCTTCTCGCCGAGATCAGGCGGCGGAAGGTGGTGTCTCCGGTGACCGGAAAATCTACCGGCGGTGGCGTTAACATCTCGGCGTCCCACTCCGGCGGCGACGACATGGGGTCGACATCGACGGGATCGATGGAGGCGGCAACGGCGGCGGGCGCTGATATATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCTGGCGAAGAAACAATGCGAGGAGTTGGTGGCGTTTCTTAGAGACTCGCTGAACGTGAGCCCCGATGTGATAGAGCGCATCATTCGGCAAGGAACGTGTGTGTCCAGCAACAATGATGCGGTGCGTTTTGATGCTATTATTAATAATGATCTTGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCACAACAACCACCACCCAAAGGTGACAATGGAGAAAGTTTGAAACTATTTGGGGTTTGGTTGAAGGGTCAAAATGGGAAAGAGAATTCAATTGGTAAATGCCGCAAGAGAGGGCGCCAAGACTACCCTATTGCTGCCACTGCCAAGGAATTGAAGACCCTAGTCTAG 849 0.5218 MSQQQRSTPAPFLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQTDLLAEIRRRKVVSPVTGKSTGGGVNISASHSGGDDMGSTSTGSMEAATAAGADISGENEKLKKDNEKLSGELALAKKQCEELVAFLRDSLNVSPDVIERIIRQGTCVSSNNDAVRFDAIINNDLDDDENAVGECEPQQPPPKGDNGESLKLFGVWLKGQNGKENSIGKCRKRGRQDYPIAATAKELKTLV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1484 282 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Gso17g1484 282 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1484 282 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1484 282 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1484 282 MobiDBLite consensus disorder prediction 219 240 - -
Gso17g1484 282 Gene3D - 3 102 IPR036388 -
Gso17g1484 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 257 IPR027725 -
Gso17g1484 282 Coils Coil 150 170 - -
Gso17g1484 282 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1484 282 MobiDBLite consensus disorder prediction 114 135 - -
Gso17g1484 282 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g1484 282 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 4 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1484 Gso-Chr17 18450859 18454820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1484 1 274 HSF AT4G36990 51.246 1.72e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso17g1484 HSF_DNA-bind 8.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1484 K09419 - gmx:100801638 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1595 1 52634177 52636373 Gso17g1484 17 18450859 18454820 PCT
Gso11g0484 11 4289643 4291971 Gso17g1484 17 18450859 18454820 PCT
Gso17g1484 17 18450859 18454820 Gso1g1595 1 52634177 52636373 PCT
Gso17g1484 17 18450859 18454820 Gso11g0484 11 4289643 4291971 PCT