Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1472 ATGGATGTGGACATAGTGAAAACTTCCAACAACAACAACAACATGGACGTTATGGCAATGATGATGCAAATGGAAAAGTTCCCCGAATTATTATTCTGCGACGACCCTTTTTATACCACCACACCCACTTACCAAGAAACCGATTTGTTATCAAGTGGAAGAAGCTCCTCATCAACAACCAGCGCTTCCACCCTATTCAACAACAATGTAACAACCACAATTCCACCGACGACAACACCGTCAAATAATGTTGTCCAATTTTCCAACATTGATGACCTTTTCCAACAACAACCACCTATGTCACAGTCCCTTCAACTTCAACCCTACCCTTCTGAAAAGAAGAAGAAGAACAACAACTCGATGGCGGCGATGAGGGAGATGATATTCCGGATAGCGGTGATGCAACCGGTTCACATCGACCCGGAATCCATAAAGCCACCCAAAAGAAGAAACGTGAAGATCTCGAAGGATCCACAGAGCGTGGCGGCGCGGCACCGGAGAGAGAGGATAAGCGAGAGGATAAGGATTCTACAGAGACTGGTCCCTGGCGGCACAAAAATGGACACTGCTTCGATGCTGGACGAGGCTATTCACTACGTCAAGTTCTTGAAGAAACAGGTGCAGACGCTGGAACAAGCAGGGGCAAATAGGTCACCACACAGTAGTAATAATAATAATAATATTCTCAATACTACTCACGTTGTTGGTGCTGTTGGTTTTCCGCTAGGGATGTCTTCTAATTACTCCAATAATATAATTAGTAATGTTGTTAATTATTCTTTGTTGATGAAGGGTGGTTGCCAACCTTGTCAAGTGTTCGGTTCCACTTCTAAACAATTGCTCAGCTAA 849 0.4405 MDVDIVKTSNNNNNMDVMAMMMQMEKFPELLFCDDPFYTTTPTYQETDLLSSGRSSSSTTSASTLFNNNVTTTIPPTTTPSNNVVQFSNIDDLFQQQPPMSQSLQLQPYPSEKKKKNNNSMAAMREMIFRIAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRSPHSSNNNNNILNTTHVVGAVGFPLGMSSNYSNNIISNVVNYSLLMKGGCQPCQVFGSTSKQLLS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1472 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Gso17g1472 282 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 277 IPR045843 GO:0003700|GO:0006355
Gso17g1472 282 SMART finulus 160 209 IPR011598 GO:0046983
Gso17g1472 282 PANTHER TRANSCRIPTION FACTOR HEC2 1 277 - -
Gso17g1472 282 Gene3D - 153 226 IPR036638 GO:0046983
Gso17g1472 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 213 IPR036638 GO:0046983
Gso17g1472 282 Pfam Helix-loop-helix DNA-binding domain 163 203 IPR011598 GO:0046983
Gso17g1472 282 Coils Coil 193 213 - -
Gso17g1472 282 CDD bHLH_AtIND_like 155 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1472 Gso-Chr17 18045299 18046679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1472 117 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 90.625 2.12e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1472 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1472 - - gmx:100812308 451.055