Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1470 ATGGATTGGGTTCGAGGAGACGCTGTCGGACGAGGAAGCTTTGCTACCGTTAGTTTAGCTATTCCAACGACGAATTACAATCAGTTTCCGTCTCTAACCGTGGTTAAGTCCGCTGACGCTCAAACCTCGTGCTGGCTCAGAAACGAGAAACACGTGCTGGATCGCCTAGGTTCGTGTCCGAGGATAATTCGCTGCTTCGGAGATGACTGCAGTTTCGAGAACGGCGTCGAGTACTACAATTTGTTCCTCGAATACGCCGCCGGCGGGAGTCTCGCCGACGAATTGAGGAACCACGATGGCAGGATTCCCGAGCCTCAGGCTCGGGAATACACGAGGGACATCGTGGAGGGTTTGAGCCACGTGCACAAAAACGGGTTTGTTCACTGCGATATAAAGCTGCAGAACATCCTCGTATTCGAGGACGGAAGGATTAAAATTGCGGATTTCGGCCTCGCGAGGGAGGCAGGGGAGAGACAGGGGAAGAAGAGTGAATGCAGGGGGACTCCGATGTTTATGTCGCCGGAGCAAGTGACCGGCGGCGAGTGTGAATCGCCCGCGGATATATGGGCTTTGGGATGTGCAGTTGTGGAGATGGTGACCGGGAAACCGGCGTGGCAGGTGGAGAATGGGTCGAGCATGTGGTCGCTGTTGCTTCGAATTGGGGTGGGACAAGAGGTTCCCGAGATCCCTAATAATTTGTCCGAAGATGGAAAAGATTTCATTGAAAAATGTTTCATTAAGGATCCTAAGAAGAGGTGGAGCGCAGAAATGCTATTGAAACACCCTTTTCTACTCAACGATGACACTGTTTCATTTAAGCGCGTTCATGAGTCGCCCAGAAGCCACTTTGATTTCCCCGATTGGGTTTCTAGCGTGGCGAATTCGCTTCCCAGTTCGCCGGAATTTCAAGAAAAGTGGGGTTTTGATGATGAGTTCTGTTCGCCGGAGGACCGGCTCCGGCAGCTTTTGACTGTTAATCGGCCGGCGAGTTGGTCGGAATCAGATGGGTGGAGTAGTGTTAGGTGA 1026 0.5224 MDWVRGDAVGRGSFATVSLAIPTTNYNQFPSLTVVKSADAQTSCWLRNEKHVLDRLGSCPRIIRCFGDDCSFENGVEYYNLFLEYAAGGSLADELRNHDGRIPEPQAREYTRDIVEGLSHVHKNGFVHCDIKLQNILVFEDGRIKIADFGLAREAGERQGKKSECRGTPMFMSPEQVTGGECESPADIWALGCAVVEMVTGKPAWQVENGSSMWSLLLRIGVGQEVPEIPNNLSEDGKDFIEKCFIKDPKKRWSAEMLLKHPFLLNDDTVSFKRVHESPRSHFDFPDWVSSVANSLPSSPEFQEKWGFDDEFCSPEDRLRQLLTVNRPASWSESDGWSSVR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1470 341 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Gso17g1470 341 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Gso17g1470 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 295 - -
Gso17g1470 341 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1470 341 CDD STKc_MAPKKK 2 264 - -
Gso17g1470 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Gso17g1470 341 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 295 - -
Gso17g1470 341 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1470 341 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Gso17g1470 341 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1470 Gso-Chr17 17971684 17973289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1470 1 341 MAP Kinase Kinase Kinase AT4G36950 52.161 1.81e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso17g1470 Pkinase 7.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1470 - - gmx:100798607 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1605 1 52737367 52738715 Gso17g1470 17 17971684 17973289 PCT
Gso11g0474 11 4187807 4189262 Gso17g1470 17 17971684 17973289 PCT
Gso17g1470 17 17971684 17973289 Gso1g1605 1 52737367 52738715 PCT
Gso17g1470 17 17971684 17973289 Gso11g0474 11 4187807 4189262 PCT