Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1467 ATGGCCTTCAAATGGAAATGTTGTTCGCTTGTGCCTTCAAAGGTTGGGGGTTTTGGATTCGCAAGTTTGCTGAGATATACGCGTCCAAGTGAAAAGATCCAGTGGGCTCAATGTAAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCACTTCTTCCATCAAAATGGACATGTTCTGATAATTTGTGGGATCCAGAAAGTGAAGATGTAATTGTCGCTCTGACTGATATCTTGAAGCTACCTCTGATGGATAAAAGCAATGGCTGCAGCTTCTCTAGCATATCTTCAATTGTTGTCTTTTCAAGTGCTGTTTTTGTTGTCTCCTTGATTTTGGTTCGTCTCCTTTATCTCTTATACTGTAGCAGCAAGCCCTTGAGCAAAAGGGCTTCAAAACCTTTTAGTACCCTTATTATTTTAGGATCAGGTCGTCATATTGTTGAGATGCTTAATCTACTGGCAGTGTTACAGAAAGGTAGGTTTAATCCAAGATTCTACATTGCTGCTGCTACTGATAATATGAGTCTTCAAAAAGCTCAGTTGTTGGAGAATTCCCTGGCTGCTGAGTACGTTCATGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGATACTGTGGGAAACAGCAAATAGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAGCAAGAAAGCTTTTGAGGCAAAATTTGAAAACTGTTCGGAGGATATACTAGCGGCAAGAGAGCTTGCTGCATCTTCTACTGAAGCTGTGGCAAAATCCAAAAAGGAAATGAGACAGAAACGAGCTTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGACCTTTGGCCAAATGTCTAATAAAAAAAGGGAGCAAGCAGCCAAGGAAGTAGCTGCAGCAATTAACAAGAAAGCTTTTGAGGCAAAATTTGAAAACTGTTCGGAGGATATACTAGCGGCAAGAGAGCTTGGTGCATCTTCTACTGAAGCTGTGGCAAAATCCAGAAAGTTGCAACATCATAAAAGACCTTTTGTTGAGATACGCAGTTCTCTCCATGTTTTGGAGCGCAATTGCTTGCTCTAA 1140 0.4149 MAFKWKCCSLVPSKVGGFGFASLLRYTRPSEKIQWAQCKDCFKWRKLPASALLPSKWTCSDNLWDPESEDVIVALTDILKLPLMDKSNGCSFSSISSIVVFSSAVFVVSLILVRLLYLLYCSSKPLSKRASKPFSTLIILGSGRHIVEMLNLLAVLQKGRFNPRFYIAAATDNMSLQKAQLLENSLAAEYVHDESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAASKKAFEAKFENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAETFGQMSNKKREQAAKEVAAAINKKAFEAKFENCSEDILAARELGASSTEAVAKSRKLQHHKRPFVEIRSSLHVLERNCLL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1467 379 Pfam Brf1-like TBP-binding domain 199 324 IPR011665 -
Gso17g1467 379 Pfam Oligosaccharide biosynthesis protein Alg14 like 137 188 IPR013969 GO:0006488
Gso17g1467 379 MobiDBLite consensus disorder prediction 276 306 - -
Gso17g1467 379 PANTHER GLYCOSYL TRANSFERASE-RELATED 92 192 IPR013969 GO:0006488
Gso17g1467 379 Gene3D Single helix bin 190 241 - -
Gso17g1467 379 ProSiteProfiles Zinc finger CW-type profile. 29 98 IPR011124 GO:0008270
Gso17g1467 379 Pfam CW-type Zinc Finger 34 69 IPR011124 GO:0008270
Gso17g1467 379 Gene3D - 26 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1467 Gso-Chr17 17881614 17891621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1467 18 66 B3 DNA Binding Superfamily AT4G32010 53.061 2.19e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1467 K15196 - gmx:100810175 689.108