Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1463 ATGTCTTCTTCCACACAGGACGAAATCTCCTTTGTCCTGCGTCAGTTTCTTCTTCGTTCCTCTGTCACAACCCACGAGAGTAACGACGACGCACGCAATTCCATGTCCAAAACTGCTCTACCAGATGGGATCTCAGCCTACAAGGGTTCTTCTGCTGCCAACGTGTCTTCTCTGTCGGTGGCAGCGAGTGAGAATGAAACTGATGACTTCGACTGCGAGAGTGAGGAAGAAGAGGTTCCAACTCCACCAAAGTCGATTCGTTCTAGGAGTTCCTCCAAAAGGAACAGAGCTGCGGAAGTTCATAACCTCTCTGAAAAGCGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTTATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATATCTTAAACAGCTTCATCTCAAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATACTATGTTCTTTCAAGAAGGTTTGCAACCTCTGCAATTGTCTCAGGTGCCGAGAATGGATTCAGGTGAAGAAAGCAGACTTATCCCTTCAAACCCAACAGCTTCTCTGCCTATGCACCAAGAAAACCCCATGCACTATTTGTCCAATCTACCTAACAAACTCGCCATGGCAGATCAGCAATCCGTGCCAACTCCATCATATATAATCAACTCAGAAACTTCTTTCAGGCTGGAATCTCCTATTCCAGAAAATATAAGATCATTTCAACTCCGAAGATTTCCCGAGATGTGCAGGGAAGACATATTGCAGCACCAGCATTTAAATGCAAACCATTAA 819 0.4396 MSSSTQDEISFVLRQFLLRSSVTTHESNDDARNSMSKTALPDGISAYKGSSAANVSSLSVAASENETDDFDCESEEEEVPTPPKSIRSRSSSKRNRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLHLKVQMLSMRNGLSLHTMFFQEGLQPLQLSQVPRMDSGEESRLIPSNPTASLPMHQENPMHYLSNLPNKLAMADQQSVPTPSYIINSETSFRLESPIPENIRSFQLRRFPEMCREDILQHQHLNANH* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1463 272 CDD bHLH_AtPIF_like 97 158 - -
Gso17g1463 272 PANTHER TRANSCRIPTION FACTOR SPATULA 3 272 - -
Gso17g1463 272 Gene3D - 91 155 IPR036638 GO:0046983
Gso17g1463 272 MobiDBLite consensus disorder prediction 22 108 - -
Gso17g1463 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 156 IPR036638 GO:0046983
Gso17g1463 272 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 272 IPR031066 -
Gso17g1463 272 MobiDBLite consensus disorder prediction 92 108 - -
Gso17g1463 272 MobiDBLite consensus disorder prediction 22 40 - -
Gso17g1463 272 Pfam Helix-loop-helix DNA-binding domain 100 146 IPR011598 GO:0046983
Gso17g1463 272 SMART finulus 102 151 IPR011598 GO:0046983
Gso17g1463 272 MobiDBLite consensus disorder prediction 49 64 - -
Gso17g1463 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 145 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1463 Gso-Chr17 17501283 17504937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1463 65 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.691 6.57e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1463 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1463 - - gmx:100806962 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1612 1 52787186 52790534 Gso17g1463 17 17501283 17504937 PCT
Gso11g0470 11 4148941 4152363 Gso17g1463 17 17501283 17504937 PCT
Gso17g1463 17 17501283 17504937 Gso1g1612 1 52787186 52790534 PCT
Gso17g1463 17 17501283 17504937 Gso11g0470 11 4148941 4152363 PCT