Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1461 ATGAATCGTCAAGGTGACTCTGATGGTCAAACTAATACCAACAACAGATCAAACAACGAAAACCAAACGATGCCTCTTTCACCATTTGAAACATTGGAGTTGCTTCCTTTATTTCCGCTCACACCAGAAAATGCAGGGCAAGTAGAAGATATGCCTGGAGCCGATGATATGGCTCCATTGCTCGGACAAGAGAGTACCATGTTTAGACAAGTTGGAACCTCGGTTGGGACTCCTTCATTTAATTTGCCCCAGAGGCTCAATCATTTAGAGCCAAGGCAATTAGTATCTGGATATGAGGACGATAATGGTAATGAAGCGGTTGTGTACCACCTTCTGAATGACCAAGCTGGCCTTTCAACGTTGAGAGCTTCACAGTCACAAAGATTGAACTACTCTGGTGGAGCAAGTAGTTCTAGAACTCATAACTATCATAATCAAGTGCAAGTATTAGAATCTGGAGTTCCACCTTACGTCCAACATGGACCCTCGTTGTCACCACTACCATCATATCCTTCCGCGGAAGAGAGAAGAAGGCTTTCATCTTACGTTCAGTCTACCCTAGAAGCTCTACGCAGTGGTCCATCCGCTGTAATGTTCGATATAGATTTTGACACAATGGAATTCAGGAGCATCGACCACGCACTTGTGTCACCATATGGGTTTCAGAACCCCGAAGAATTTGATGCATTGCCCCAGGGACTTACTGTAGAAACGATCGTGCAGCACCTGGAGAGTGAAACTTATGTGATTGTTAATAAGGATGCTCCAGAAGAAGATAAGGAAAAATGCCCCATTTGTCTGGAAGAGTTTGAAGAGGGAAACTTAATTGGGAAGCTTCATTCTTGTATCCACAAGTATCACCGTCACTGCATCCGACAGTGGCTTTTGTGCAGGAACTTTTGCCCAGTGTGCAAAAGAGTTGGGCTGGAAACCAACAATAATGTTAAAAGTGAAGCTACAGCAGCGGAAATTAATATTAATGAAAATGACAATGACAATGTTTAG 1005 0.4328 MNRQGDSDGQTNTNNRSNNENQTMPLSPFETLELLPLFPLTPENAGQVEDMPGADDMAPLLGQESTMFRQVGTSVGTPSFNLPQRLNHLEPRQLVSGYEDDNGNEAVVYHLLNDQAGLSTLRASQSQRLNYSGGASSSRTHNYHNQVQVLESGVPPYVQHGPSLSPLPSYPSAEERRRLSSYVQSTLEALRSGPSAVMFDIDFDTMEFRSIDHALVSPYGFQNPEEFDALPQGLTVETIVQHLESETYVIVNKDAPEEDKEKCPICLEEFEEGNLIGKLHSCIHKYHRHCIRQWLLCRNFCPVCKRVGLETNNNVKSEATAAEININENDNDNV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1461 334 MobiDBLite consensus disorder prediction 1 24 - -
Gso17g1461 334 Pfam Ring finger domain 262 305 IPR001841 -
Gso17g1461 334 ProSiteProfiles Zinc finger RING-type profile. 263 305 IPR001841 -
Gso17g1461 334 SUPERFAMILY RING/U-box 248 309 - -
Gso17g1461 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 313 IPR013083 -
Gso17g1461 334 SMART ring_2 263 304 IPR001841 -
Gso17g1461 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 182 309 - -
Gso17g1461 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 2 179 - -
Gso17g1461 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 182 309 IPR045191 GO:0061630
Gso17g1461 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 179 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1461 Gso-Chr17 17419115 17426029 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1461 225 311 C3H Transcription Factor Family AT2G15530 33.708 1.33e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1461 - K10635 gsj:114392181 588.571