Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1458 ATGAATCCTCAAGGTGACTCTGATGGTCAAACTAATACCAACAACAGATCAAACAACGAAAACGAAATGATGCCTCTTTCACCATTTGAAACATTGGAGTTGCTTCCTTTATTTCCGCTCTCACCAGAAAATGCAGGGCAAGTAGAAGATATGCCTGGAGCCGATGATATGGCTCCATTGCTCGGACAAGAGAGTACCATGTTTAGACAAGTTGGAACTTCGGTTGGGACTCCTTCATTTAATTTGCCCCAGAGGCTCAATCATTTAGAGCCAAGGCAATTAGTATCTGGATATGAGGACGATAATGGTAGAGTTCGTAATGAAGCGGTTGTGTACCACCTTCTGAATGACCAAGCTGGCCCTTCAACTTTGAGACCTTCACAGTCACAAAGATTGAACTACTCTGGTGGAGCAAGTAGCTCTAGAACTCATAACTATCATAATCAAGTGCAAGTATTAGGAACTGGAGTTCCACCTTACGTCCAACATGGACCCTCGTTGTCACCACTACCATCATATCCTTCTGCGGAAGAGAGAAGAAGGCTTTCATCTTACGTTCACTCTATCCTAGAAGCTCTACGCAGTGGTCCATCCGCTGTAATGTTTGATATAGATTTTGACACAATGGAATTCAGGAGCATCGACCACGCACTTGTGTCACAATATGGGTTTCAGAACCCCGAAGAATTTGATGCATTACCCCAGGGACTTACTGTCGAAACGATCGTGCAGCACCTGGAGAGTGAAACTTATGTGATTGTTAATAAGGATGCTCCAGAAGAAGATAAGGAAAAATGCCCCATTTGTCTGGAAGAGTTTGAAGAGGGAAACTTAATTGGGAAGCTTCATTCTTGTATCCACAAGTATCACCGTCACTGCATCCGACAGTGGCTTTTGTGCAGGAACTTTTGCCCAGTGTGCAAAAGAGTTGGGCTGGAAACCAACAATAATGTTAAAAGTGAAGCTACAGCAGCTGAAGTTAATATTAATGAAAATGACAATGACAATGTTTAG 1014 0.429 MNPQGDSDGQTNTNNRSNNENEMMPLSPFETLELLPLFPLSPENAGQVEDMPGADDMAPLLGQESTMFRQVGTSVGTPSFNLPQRLNHLEPRQLVSGYEDDNGRVRNEAVVYHLLNDQAGPSTLRPSQSQRLNYSGGASSSRTHNYHNQVQVLGTGVPPYVQHGPSLSPLPSYPSAEERRRLSSYVHSILEALRSGPSAVMFDIDFDTMEFRSIDHALVSQYGFQNPEEFDALPQGLTVETIVQHLESETYVIVNKDAPEEDKEKCPICLEEFEEGNLIGKLHSCIHKYHRHCIRQWLLCRNFCPVCKRVGLETNNNVKSEATAAEVNINENDNDNV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1458 337 SMART ring_2 266 307 IPR001841 -
Gso17g1458 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Gso17g1458 337 ProSiteProfiles Zinc finger RING-type profile. 266 308 IPR001841 -
Gso17g1458 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 180 IPR045191 GO:0061630
Gso17g1458 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 185 312 IPR045191 GO:0061630
Gso17g1458 337 MobiDBLite consensus disorder prediction 119 143 - -
Gso17g1458 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 185 312 - -
Gso17g1458 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 2 180 - -
Gso17g1458 337 Pfam Ring finger domain 265 308 IPR001841 -
Gso17g1458 337 SUPERFAMILY RING/U-box 251 312 - -
Gso17g1458 337 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g1458 337 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1458 Gso-Chr17 16905762 16914414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1458 228 314 C3H Transcription Factor Family AT2G15530 33.708 1.27e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1458 - K10635 gsj:114392181 623.624