Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1449 ATGATAGGAGTACCATGGACAGAAGAAGAGCACCGAACGTTCCCTGTTGGATTTGAGAAGCTAGGAAAAGGTGATTGGAGGGGTATCTCTAGAAACTATGTGACTTCAAGAACCCCAACCCAAGTCGCTAGCCATGCTCATAAGTACTTTATTCGGCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGATATGGTTGGTAACGACATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCCAAATGTGAAATTGAGGATGATGTGACCTTGTCACTTGTTCAATTACAAGATACTAAATTAGATGAACATAAAGATAGTGATAAATATTGTGAAGCTGGACCAGCTGGTGCTGAACATGAAGTTGTGCCTTTGTGGCTTCATCCTCAGATGAAATCTTCAAATAATAATGTTGCAGCAGTAGTTCCTGATCTGGAGCTCACTCTTGCAGTCTCCAAGGGCAAGGCTAAAACCCTTCTAGGCCTGGAACAAACACAAACAAAATCATCCCCAGATTCCTTCCTTCTTGGACCAATTAGCGTGACTTGA 561 0.4153 MIGVPWTEEEHRTFPVGFEKLGKGDWRGISRNYVTSRTPTQVASHAHKYFIRLATMNKKKRRSSLFDMVGNDITNPISSSNCKSSKCEIEDDVTLSLVQLQDTKLDEHKDSDKYCEAGPAGAEHEVVPLWLHPQMKSSNNNVAAVVPDLELTLAVSKGKAKTLLGLEQTQTKSSPDSFLLGPISVT* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1449 186 Pfam Myb-like DNA-binding domain 5 49 IPR001005 -
Gso17g1449 186 Gene3D - 4 56 - -
Gso17g1449 186 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Gso17g1449 186 SUPERFAMILY Homeodomain-like 4 54 IPR009057 -
Gso17g1449 186 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 4 52 IPR006447 GO:0003677
Gso17g1449 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Gso17g1449 186 ProSiteProfiles Myb-like domain profile. 5 50 IPR001005 -
Gso17g1449 186 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 161 - -
Gso17g1449 186 CDD SANT 5 50 IPR001005 -
Gso17g1449 186 PANTHER TRANSCRIPTION FACTOR KUA1 3 161 - -
Gso17g1449 186 SMART sant 2 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1449 Gso-Chr17 16547669 16548637 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso17g1449 Myb_DNA-binding 8.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1449 - - gmx:100794742 375.17