Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1438 ATGTGGGATCTCAACGACTCACCCGATCAGAGGATTAACAAGGACGAAGGATCCGAAGAAGGGTGTTCTTCCCTCAAGACTTCCATCGATGGAGATGACATGATCAACAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCGAGCTCTTCTGCAGTAGTCATCGAAGACGGATCAGAAGAAGAAGTGGACGAAGAAGAAGAAGAAGAAGAAGATGATGAAGAAGGTGGTGTTGGAAGAAGCATGAAGAAACGTAGCAGCAAGATTTTCGGGTTCTCTGTGACCCAAGATGAAGAGTCCATGGACAGTGACCACCCACCTGTGACAAGGCAATTTTTTCCGGTGGAAGATGCTGACGTAGCGGTTGCAACAGGTGGTGGAACCGGTGGAAGCTCTACTTTCCCTCGTGCTCACTGGGTGGGTGTGAAATTTTGCCAATCAGAAACACTTGGCGCTGGAAAATCATCAGTGGAGGTTTCTCAACCTATGAAGAAGAGTCGCCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGAGGAGTCACCTTCTACCGAAGAACGGGTCGCTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCTTATGATAGAGCGGCTATTAAATTCCGAGGAGTGGAGGCTGACATTAACTTCAATATTGAAGACTATGAAGATGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACTGAGATAGAAGCTGCAAGGGCTTATGACAAAGCCGCCATAAAATGCAATGGCAAAGAGGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAATGCTGTAACCCATGATCAGCACCTGCCATCTGAGTCTAATTGGCGTAATGGGGGAAACAAGCCTAAGCTGGTGAATATACTCCCCAAACCATGTAATAGAAGCAACAACAAGGACTCACATGGAAGGGATGTGCACGGGGAGAGTGAAACACTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAATGAAATGCAACTAAGATATGGTCCCTACAAGTCTCACGGTGGAGAGTCCCAAATGCTTCAAAATTTTGCACACATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCATTGGAGGCCGAATTGGGAGTGATCTTTCATTATCAATGACTGATCAACAACAGTGGCAAACCGGGCCTTCACATTATTTAGCAACTGCTGCAGCATCATCAAGTTTCCAACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACATTCTCATGAGACCCTCATGA 1599 0.464 MWDLNDSPDQRINKDEGSEEGCSSLKTSIDGDDMINNNKGKRVGSVSNSSSSAVVIEDGSEEEVDEEEEEEEDDEEGGVGRSMKKRSSKIFGFSVTQDEESMDSDHPPVTRQFFPVEDADVAVATGGGTGGSSTFPRAHWVGVKFCQSETLGAGKSSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYNNELNTAESTGNAPDHNLDLSLGNATSKPGNNQALGNHATNAVTHDQHLPSESNWRNGGNKPKLVNILPKPCNRSNNKDSHGRDVHGESETLRMLSQTHLHSPASNEMQLRYGPYKSHGGESQMLQNFAHIHPPNFHFPSSSIGGRIGSDLSLSMTDQQQWQTGPSHYLATAAASSSFQQQIRPSSQGWLQKNGFHILMRPS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1438 532 SMART rav1_2 177 239 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 SMART rav1_2 269 332 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 Pfam AP2 domain 177 225 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 Pfam AP2 domain 268 317 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Gso17g1438 532 MobiDBLite consensus disorder prediction 58 76 - -
Gso17g1438 532 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 530 - -
Gso17g1438 532 Gene3D AP2/ERF domain 268 327 IPR036955 GO:0003700|GO:0006355
Gso17g1438 532 Gene3D AP2/ERF domain 176 235 IPR036955 GO:0003700|GO:0006355
Gso17g1438 532 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 530 - -
Gso17g1438 532 CDD AP2 268 328 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 ProSiteProfiles AP2/ERF domain profile. 269 326 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Gso17g1438 532 MobiDBLite consensus disorder prediction 1 85 - -
Gso17g1438 532 MobiDBLite consensus disorder prediction 22 56 - -
Gso17g1438 532 MobiDBLite consensus disorder prediction 155 177 - -
Gso17g1438 532 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 CDD AP2 177 234 IPR001471 GO:0003700|GO:0006355
Gso17g1438 532 ProSiteProfiles AP2/ERF domain profile. 177 233 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1438 Gso-Chr17 15953876 15958016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1438 1 365 AP2-EREBP Transcription Factor Family AT4G36920 65.782 2.46e-135 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso17g1438 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1438 K09284 - gmx:100792442 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1619 1 52856504 52860158 Gso17g1438 17 15953876 15958016 PCT
Gso11g0463 11 4083474 4087107 Gso17g1438 17 15953876 15958016 PCT
Gso17g1438 17 15953876 15958016 Gso1g1619 1 52856504 52860158 PCT
Gso17g1438 17 15953876 15958016 Gso11g0463 11 4083474 4087107 PCT