Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1434 ATGGAAGGAGAAGAAGGAGGAATTGCAACAAAGAAGAGAGGGAAAGAGGGTGAAACTGAGACGACGCGCTACAAAGGAATCAGAATGAGAAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCAAGGATTTGGCTCGGTTCTTACTCCACGCCCGTCGCGGCGGCGCGTGCTTACGACACCGCCGTTTTCCACCTCCGGGGCCCCTCTGCGCGCCTCAACTTCCCCGAGCTTGTTGCCGCGGAGGGCCCCGCCGCCGACATGTCCGCAGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCTCTCCACCGCCAGCACCCCCACGCGCTGCCTGCTGGAGAATTCGCCGACCGGGTTGACCTTAATAAGATGCCCGAACCCGAGAATTCGGATTGTGACTACTGGGACAGGGATTAG 444 0.5991 MEGEEGGIATKKRGKEGETETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPELVAAEGPAADMSAASIRKKATEVGARVDALHRQHPHALPAGEFADRVDLNKMPEPENSDCDYWDRD* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1434 147 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Gso17g1434 147 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Gso17g1434 147 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Gso17g1434 147 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Gso17g1434 147 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Gso17g1434 147 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Gso17g1434 147 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 140 - -
Gso17g1434 147 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Gso17g1434 147 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g1434 147 MobiDBLite consensus disorder prediction 115 147 - -
Gso17g1434 147 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1434 Gso-Chr17 15823152 15824010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1434 7 142 AP2-EREBP Transcription Factor Family AT2G23340 58.861 1.87e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1434 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1434 K09286 - gmx:100784157 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1621 1 52890576 52891560 Gso17g1434 17 15823152 15824010 PCT
Gso11g0461 11 4064281 4065298 Gso17g1434 17 15823152 15824010 PCT
Gso17g1434 17 15823152 15824010 Gso1g1621 1 52890576 52891560 PCT
Gso17g1434 17 15823152 15824010 Gso11g0461 11 4064281 4065298 PCT