Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1420 ATGGCTCTCGGCGACGATGCGCAGCACCACTCTCCCTCGTTCCTCGATGCCCTTCTCTGCGAAGAGCGAGAAACCTTCGAGGAAGACTTTGATGAGAACGGTTATGAGCGTGAGACCGAAAACAACGAACCCTCTGTGATAAAGTCGCAATCTTTGCCCTTGGTTTTGCACGATAATGACCTGTTCTGGGAAGACGAAGAGCTCGTGTCGTTAATCGCGAAAGAGGGAGAGACCCATTTGTGTTTTCATGGTGTCGTTGCTAATGGGGCCTTGGAAGGGCCTCGTGTTGAGGCTGTGAACTGGATTTCGAAAGTTTGTGGGCACTATGGGTTCTCCGCTTTGACAACTGTTCTCGCTGTTAACTACTTTGATAGGTTCATCACAAGTTTGAAGTTTCAGAACGATAAGCCGTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGTGAAAACGGAAGAGACCCATGTGCCACTCCTCTTGGACCTTCAAGTGGAGGAGTCAAGGTTTGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAGTGGAGGATGCATCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTGAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGTGTTCTTCTCAATGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCGACAATGATCCGTGTTATTAAAGAGATTGAATCATTTAATGCGACCGAGTACATTGATCAGCTTCTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAACCAGTGCTACAAAATCATACAGAAACTATTAGGTTGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGACTATCTGAACCGGGTAGCCCAGGTGCTGTCACTGATGCATCTTTCAGTTGTGATAGCTCAAATGATTCATGGACCGTGTCATCATCAGTCTCACTTTCACTGGAGCCGCTGTTGAAGAGGAGAAAATCTCAGGACCAGCAAATGCGACTGCCTTCTGTCAATTGTGTGTCAATTGATGTTCTTAATAGCCCTCGCTAA 1116 0.4668 MALGDDAQHHSPSFLDALLCEERETFEEDFDENGYERETENNEPSVIKSQSLPLVLHDNDLFWEDEELVSLIAKEGETHLCFHGVVANGALEGPRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFITSLKFQNDKPWMTQLTAVACLSLAVKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIADSRVMSYLPSTLAAATMIRVIKEIESFNATEYIDQLLGLLKISEEQVNQCYKIIQKLLGCYEGIYSLHQKRKRLSEPGSPGAVTDASFSCDSSNDSWTVSSSVSLSLEPLLKRRKSQDQQMRLPSVNCVSIDVLNSPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1420 371 Pfam Cyclin, N-terminal domain 95 194 IPR006671 -
Gso17g1420 371 Gene3D - 196 285 - -
Gso17g1420 371 SMART Cyclin_C_2 197 324 IPR004367 -
Gso17g1420 371 Pfam Cyclin, C-terminal domain 197 293 IPR004367 -
Gso17g1420 371 SMART cyclin_7 100 188 IPR013763 -
Gso17g1420 371 CDD CYCLIN 95 187 IPR013763 -
Gso17g1420 371 Gene3D - 94 195 - -
Gso17g1420 371 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Gso17g1420 371 PANTHER CYCLINS 8 354 IPR039361 -
Gso17g1420 371 PANTHER CYCLIN-D3-2 8 354 - -
Gso17g1420 371 SUPERFAMILY Cyclin-like 198 297 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1420 Gso-Chr17 15457021 15458936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1420 7 360 Core Cell Cycle Gene Families AT5G67260 51.934 5.28e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1420 K14505 - gmx:100785030 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0849 5 27502647 27504520 Gso17g1420 17 15457021 15458936 GST
Gso17g1420 17 15457021 15458936 Gso1g1631 1 52979225 52981407 PCT
Gso17g1420 17 15457021 15458936 Gso11g0451 11 3991134 3993275 PCT