Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1417 ATGATGGCCGTGGCCCGAAAGGAAATGGACCGGATCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCTCTTCAGAAGCTCGTGGAGCGGCATGGGCCCAGAAACTGGTCCCTCATCAGCAGGTCCATTCCGGGCCGGTCTGGGAAATCGTGCAGGCTCCGATGGTGCAACCAGCTGTCGCCACAGGTCGAGCACCGGGCCTTCACGCCGGAAGAGGACGAGACCATAATTAGGGCCCATGCTCGGTTCGGTAACAAGTGGGCCACCATAGCCCGCCTCCTCTCGGGCCGCACCGATAACGCCATCAAGAATCACTGGAACTCAACGCTTAAACGCAAGTGCGCGTCCTTCATGACCGCCGATGAAGCCGCCGCCGGCGGCTTCAGCCCGAGGCCGCTCAAGCGATCGTTCAGCGCCGGCACGGCGGTGCCTCCTCCAGGAAGCCCCTCAGGATCCGACGTGAGCGAGTCCAGCGCTGCTCCCGGCGTGGTCTCTGTCTCTGTCTCTCCTTCACAAGTGTTTCGCCCCGTGCCGGTTCGGCCGGTTGTCGAAACGGCGTCGTCGCAAGACGACGCCGATGCCGACGCCGAGGATGCTGGACCTACTACCTCGCTGTCGCTGTCTCTTCCCGGGGTGGAGTCATCGGAAATCTCTAATCGCACCTCGACGGTTCCGGTGATGCCGGTGCACACCGTGGCTGCGGCGGCTCCGGTTCCGTTACCGGCGCCGGAGGTTGGATTAGGAGCGTTGAATTTGAATGCGGAGTTTATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAATGGGATGATGTGTTTTCAGGGTATGGAAATGATGGAAGGGTTTAGGAACGTGTCGGTGAAGAGAATTGGGATTAGCAGGGTGGATTCGTAA 918 0.6057 MMAVARKEMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMTADEAAAGGFSPRPLKRSFSAGTAVPPPGSPSGSDVSESSAAPGVVSVSVSPSQVFRPVPVRPVVETASSQDDADADAEDAGPTTSLSLSLPGVESSEISNRTSTVPVMPVHTVAAAAPVPLPAPEVGLGALNLNAEFMAVMHEMIRKEVRSYMEQQNGMMCFQGMEMMEGFRNVSVKRIGISRVDS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1417 305 Gene3D - 12 64 - -
Gso17g1417 305 Pfam Myb-like DNA-binding domain 16 74 - -
Gso17g1417 305 CDD SANT 15 57 IPR001005 -
Gso17g1417 305 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Gso17g1417 305 PANTHER MYB TRANSCRIPTION FACTOR 2 275 - -
Gso17g1417 305 CDD SANT 67 110 IPR001005 -
Gso17g1417 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Gso17g1417 305 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Gso17g1417 305 SMART sant 12 61 IPR001005 -
Gso17g1417 305 SMART sant 64 112 IPR001005 -
Gso17g1417 305 MobiDBLite consensus disorder prediction 201 218 - -
Gso17g1417 305 PANTHER MYB PROTEIN-RELATED 2 275 - -
Gso17g1417 305 MobiDBLite consensus disorder prediction 128 158 - -
Gso17g1417 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Gso17g1417 305 MobiDBLite consensus disorder prediction 183 218 - -
Gso17g1417 305 MobiDBLite consensus disorder prediction 143 158 - -
Gso17g1417 305 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Gso17g1417 305 Gene3D - 66 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1417 Gso-Chr17 15289172 15290720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1417 5 304 MYB Transcription Factor Family AT4G37260 48.521 2.08e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1417 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1417 K09422 - gmx:100806145 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0856 5 27987746 27989421 Gso17g1417 17 15289172 15290720 GST
Gso17g1417 17 15289172 15290720 Gso1g1635 1 53013496 53014888 PCT
Gso17g1417 17 15289172 15290720 Gso11g0446 11 3939375 3940940 PCT