Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1379 ATGCGCATTGCGCACGAAGCACCAGCAGCACTACTTCTCCGCTTCTTGCTAGTGTGCACCATTGTCGCCTTGCGTGCGCCGGTTGCGCAGCCCCCTATCTTGCGCATCCCCAATCACCTCATCGAAACTACTAACACCTTCACAATCGTTCACCAGCGCTACAGAACCCAGATCTCGGGTTCCAATCGTCGAGCCATGTCCAAGGCACGCGTCTACACCGATGTCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCCCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTACAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGTTGTGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGGCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTAGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAACTCCTTCGATACGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAA 1197 0.4277 MRIAHEAPAALLLRFLLVCTIVALRAPVAQPPILRIPNHLIETTNTFTIVHQRYRTQISGSNRRAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1379 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gso17g1379 398 ProSiteProfiles Protein kinase domain profile. 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1379 398 SMART serkin_6 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1379 398 SUPERFAMILY Protein kinase-like (PK-like) 69 388 IPR011009 -
Gso17g1379 398 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Gso17g1379 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA 5 398 IPR045216 GO:0004674|GO:0006468
Gso17g1379 398 Pfam Protein kinase domain 99 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1379 398 CDD STKc_CK2_alpha 80 384 IPR045216 GO:0004674|GO:0006468
Gso17g1379 398 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 5 398 - -
Gso17g1379 398 Gene3D Phosphorylase Kinase; domain 1 99 175 - -
Gso17g1379 398 Gene3D Transferase(Phosphotransferase) domain 1 176 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1379 Gso-Chr17 14588457 14596227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1379 97 384 Core Cell Cycle Gene Families AT1G76540 29.450 7.28e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gso17g1379 Pkinase 4.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1379 K03097 - gmx:100820471 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1652 1 53158787 53165251 Gso17g1379 17 14588457 14596227 PCT
Gso11g0428 11 3780924 3786876 Gso17g1379 17 14588457 14596227 PCT
Gso17g1379 17 14588457 14596227 Gso1g1652 1 53158787 53165251 PCT
Gso17g1379 17 14588457 14596227 Gso11g0428 11 3780924 3786876 PCT