Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1368 ATGTATTGGGGGGAAGTTATGGCTGGCCATGTTGGTAGAGGTGTCTTAGAGGAGGAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTTGTTGAGTATGTTAGGTTGCATTGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAAGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCTGATCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGCATAATTCTAGAGTTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGGAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCAGCAGAGAAGGCTAGAAATAGACTCATGAGGAAGCAGCAATTTCACCAGCAACAACAACAACAACAACAGTTGCAGCAGCAGCATCGGGCACAACAACAACAAATGCAATTCAACTTTGACATGAAAGGCATCATGGCCATGCTTGAGGACGACATCCATAGAACACCTTATAAATCTCAATCAAGACAAGAAATGATCAACATGCACCAAAACACCACAGAAGAGCAAGGATACTTGTACTCTATGCTCAATGACAACTCTTCTGCTTCTTCTGCACCAGAGACCTCTGCAGAAGAAGTTTTGTGGGATGGTCTGTGGAACATAGATGATGTTCATGGCAATTTCAGTGTGGCTAGTGCAGCAAGCAGATTTGGTCTATACAATTTAGTTGCTCCCTTCTGTTAA 798 0.4398 MYWGEVMAGHVGRGVLEEEVWRKGPWTAEEDRLLVEYVRLHCEGRWNSVARLARLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLMRKQQFHQQQQQQQQLQQQHRAQQQQMQFNFDMKGIMAMLEDDIHRTPYKSQSRQEMINMHQNTTEEQGYLYSMLNDNSSASSAPETSAEEVLWDGLWNIDDVHGNFSVASAASRFGLYNLVAPFC* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1368 265 PANTHER MYB TRANSCRIPTION FACTOR 3 251 - -
Gso17g1368 265 MobiDBLite consensus disorder prediction 142 164 - -
Gso17g1368 265 Gene3D - 80 124 - -
Gso17g1368 265 MobiDBLite consensus disorder prediction 122 164 - -
Gso17g1368 265 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Gso17g1368 265 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Gso17g1368 265 MobiDBLite consensus disorder prediction 122 140 - -
Gso17g1368 265 CDD SANT 80 121 IPR001005 -
Gso17g1368 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso17g1368 265 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gso17g1368 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Gso17g1368 265 Gene3D - 23 75 - -
Gso17g1368 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Gso17g1368 265 SMART sant 22 72 IPR001005 -
Gso17g1368 265 SMART sant 75 123 IPR001005 -
Gso17g1368 265 Coils Coil 145 165 - -
Gso17g1368 265 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso17g1368 265 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Gso17g1368 265 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1368 Gso-Chr17 14174683 14176371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1368 16 265 MYB Transcription Factor Family AT4G13480 53.309 6.74e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1368 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1368 K09422 - gmx:100819404 509.605