Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1345 ATGAAAAGGAAGAAGCTGCAGCAAGATCTTTGGTCAACAGCCCAAGCTCACGAGTCTTTAATGAGGAAGAAGGTGAGATCACTGTTAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAACGGTATTGAGCTACCAAAGAAGCAAGGGAATTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGATTGTGATCGAACTACTATTGGTGCTTTATTGGATAAACTAACGAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGGTAAAAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGATCTATTGTCTTCTTCAGACCCTCGAACTCAGGAGCATGCTGTTACAACGCTTCTCAATCTTTCCATCAACGAGAGTAATAAAGGAGCTATAGTAAATGTTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGTTTCTAGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCTATCCCTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTACAGGTAAGAAGGATGTTGCTACTGCTATCTTCAACCTATCTATTTATCAGGGAAATAAAGCAAAAGCTGTAAAAGCTGGTATAGTAGCCCCACTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATCGGTCAGGCCGAGCCAATTCATATTCTTGTTAAGGTTATACGAACCAGCTCTCCACGCAATCGAGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACCGGAGATCCACTGCAATTAAAACTAGCGAAAGAACATGGTGCAGAAGCAGCACTGCAAGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGTTGATAATCTGCAGAGTTCATAG 1149 0.4421 MKRKKLQQDLWSTAQAHESLMRKKVRSLLKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGNCRTKKCGGSSLSDCDRTTIGALLDKLTSNDIEQQRAAAGELRLLGKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTTLLNLSINESNKGAIVNVGAIPDIVDVLKNGSMEARENAAATLFSLSFLDENKVQIGAAGAIPALIKLLCEGTPTGKKDVATAIFNLSIYQGNKAKAVKAGIVAPLIQFLKDAGGGMVDEALAIMAILASHHEGRVAIGQAEPIHILVKVIRTSSPRNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMEGVDNLQSS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1345 382 Pfam Armadillo/beta-catenin-like repeat 209 247 IPR000225 GO:0005515
Gso17g1345 382 Pfam Armadillo/beta-catenin-like repeat 126 165 IPR000225 GO:0005515
Gso17g1345 382 PANTHER U BOX DOMAIN-CONTAINING 27 374 - -
Gso17g1345 382 SMART Ubox_2 26 64 IPR003613 GO:0004842|GO:0016567
Gso17g1345 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 220 IPR000225 GO:0005515
Gso17g1345 382 SMART arm_5 249 289 IPR000225 GO:0005515
Gso17g1345 382 SMART arm_5 167 207 IPR000225 GO:0005515
Gso17g1345 382 SMART arm_5 126 166 IPR000225 GO:0005515
Gso17g1345 382 SMART arm_5 290 330 IPR000225 GO:0005515
Gso17g1345 382 SMART arm_5 208 248 IPR000225 GO:0005515
Gso17g1345 382 SUPERFAMILY RING/U-box 27 73 - -
Gso17g1345 382 ProSiteProfiles U-box domain profile. 26 71 IPR003613 GO:0004842|GO:0016567
Gso17g1345 382 Pfam U-box domain 27 68 IPR003613 GO:0004842|GO:0016567
Gso17g1345 382 Gene3D - 85 377 IPR011989 -
Gso17g1345 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
Gso17g1345 382 SUPERFAMILY ARM repeat 96 370 IPR016024 -
Gso17g1345 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 71 IPR013083 -
Gso17g1345 382 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 27 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1345 Gso-Chr17 13799038 13800223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1345 12 376 U-box Gene Family AT3G54850 73.151 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1345 - - gmx:100798797 715.301