Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1341 ATGGCCAATGTGTTTCTACAGGTGCTATCGGTATTGGGGTTCATCATGAGACTTATCACAATCCTCTTGTGCTACATGGGCTTTCAGGATTTCTTTGAATCCAACATTACAAGGCCGAAGAGGGCGGTGTCGGTGGTGCTGATGAGGGAAATCCTGCCGGTGGTGAAGTTCTCAGAGATGGAGATGGCGGTGGAGGCAGTAGAGAGTTGCGCAGTGTGCCTGTATGAGTTTGAGGGAGAGGACGAGATCAGATGGTTGACGAACTACCGCCACATATTCCACAAAAGGTGTCTGGACCATTGGATGGGGTACGATATGAGAATGTGCACCCTATGTCGAACACCCTCCATACCCCACCATATGCAAGCTGCCTTCAATGATAAACTTTGGGCTGCTTCAGGGATCCCTGACTTCTATTACTATCATCACTAG 432 0.4907 MANVFLQVLSVLGFIMRLITILLCYMGFQDFFESNITRPKRAVSVVLMREILPVVKFSEMEMAVEAVESCAVCLYEFEGEDEIRWLTNYRHIFHKRCLDHWMGYDMRMCTLCRTPSIPHHMQAAFNDKLWAASGIPDFYYYHH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1341 143 Pfam Ring finger domain 69 113 IPR001841 -
Gso17g1341 143 ProSiteProfiles Zinc finger RING-type profile. 70 113 IPR001841 -
Gso17g1341 143 PANTHER BRH1 RING FINGER PROTEIN 2 140 - -
Gso17g1341 143 SUPERFAMILY RING/U-box 54 119 - -
Gso17g1341 143 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 140 - -
Gso17g1341 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1341 Gso-Chr17 13727832 13728263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1341 1 134 C3H Transcription Factor Family AT1G63840 44.218 2.97e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1341 K16281 - gmx:100795608 304.293