Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1333 ATGAAGAGTATGGAAAATGATGACACTGTTGACCTTAATAATCAAAACAACAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAATAATAATAATATAGGAGTTTCTACACACACACAACCTTCCTCTGCTGCCGCTGAAGTGGTTCCTACAAGCTTCTACCACACTACTCCACTTAGTAGCTATGGTTTCTACTATGGACTTGAAGCGGAAAATGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTGTGAGCAGGTCACAAGCACAAGCAATGGCTACTACTTCAACACCAAAACTGGAGAACTTCTTAGGTGGGGAAGCAATGGGGACCCCTCATCATCACTATGAATGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTGTTTTTTACAACCAACCCTCACGCCGTGACCAAAATAATAACCAAACTTACCAAAACCATGTCCAACACATTAGCACTCAACAACAACAGCAACAAGAACTTCAAGCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCCAAGCAAAGCCAAACTTCAGAAAACAACAACAACAATCTTCAGGTTCAAAACATGGGTGATGATGCTGTTTCTGTTCCTGTTGCTGGCCTTAAGAGTTGGGGAGTGAGGAACTTCCAAGCTAGCCATGCACATGAGTCAAAGATGATTGTTCCTCATCATGTGGAGGAAAATGGTGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGTGACTTGCAATCTTTGAGCTTGTCCATGAGTCCTAGCTCTCAGTCTAGCTGCGTCACAAGTTCACACCGTGCTTCATCTGCTGTCATTGATTCTGCTGCCATGGATACAAAGAAGAGGGGATCTGAAAAAGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGTGTAACACGGCATAGGTGGACTGGGAGATATGAAGCTCATCTTTGGGACAACAGCTGCAAGAAAGAGGGGCAAAGCAGGAAAGGAAGACAAGTTTATTTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTAGCTGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCCGAGGAGGGAATGCTGTAACCAACTTTGACATAACAAGATATGATGTTGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGCGAGCTTGCTAGGCGCAACCAAGAGACGACGGACAATGGAACTCAGTACATTGATCAAAATCACAATAAGCCTTCTGCATATGAGGACACTCAAGAAGCTGCTATTCTGATGCATCAGAAGAGCTGTGAGACCCAAAATGATCAGTGGAAGATGGTTCTCTACCAACAATCCTCTCAGCAACTTGAGCAGAATATTCCACCGAGAATTGAGAGTGACAGAACTAACCAGTCCTTCTCAGTGGCTTTGGAAAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAAGGTGAGAACACATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAATGTAGCCCTGAAAGGACAAGCTTGCCAATGCTCTCTGGAGTGCCTTCAACTTCATCAAAACTATTGGCTACTAATCCAAATAACGTGAATTCTTGGGACCCTTCACCCCATTTGAGGCCAGCACTTACTTTGCCTCAAATGCCAGTTTTTGCAGCTTGGACAGATGCATAG 2031 0.4313 MKSMENDDTVDLNNQNNNWLGFSLSPQMNNNNIGVSTHTQPSSAAAEVVPTSFYHTTPLSSYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEAVSRSQAQAMATTSTPKLENFLGGEAMGTPHHHYECSATETMPLSLDSVFYNQPSRRDQNNNQTYQNHVQHISTQQQQQQELQAYYSTLRNHDMMLEGSKQSQTSENNNNNLQVQNMGDDAVSVPVAGLKSWGVRNFQASHAHESKMIVPHHVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRASSAVIDSAAMDTKKRGSEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGGNAVTNFDITRYDVEKIMASSNLLSSELARRNQETTDNGTQYIDQNHNKPSAYEDTQEAAILMHQKSCETQNDQWKMVLYQQSSQQLEQNIPPRIESDRTNQSFSVALENMFHQEVEESSKVRTHVSNPSSLATSLSSSRECSPERTSLPMLSGVPSTSSKLLATNPNNVNSWDPSPHLRPALTLPQMPVFAAWTDA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1333 676 CDD AP2 326 393 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 PRINTS Ethylene responsive element binding protein signature 328 339 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 PRINTS Ethylene responsive element binding protein signature 469 489 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 Pfam AP2 domain 430 479 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 Pfam AP2 domain 327 385 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 ProSiteProfiles AP2/ERF domain profile. 429 487 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 Coils Coil 394 414 - -
Gso17g1333 676 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 15 674 - -
Gso17g1333 676 CDD AP2 428 489 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 SUPERFAMILY DNA-binding domain 428 488 IPR016177 GO:0003677
Gso17g1333 676 SMART rav1_2 429 493 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 SMART rav1_2 327 399 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 MobiDBLite consensus disorder prediction 602 641 - -
Gso17g1333 676 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 674 - -
Gso17g1333 676 ProSiteProfiles AP2/ERF domain profile. 327 393 IPR001471 GO:0003700|GO:0006355
Gso17g1333 676 MobiDBLite consensus disorder prediction 598 641 - -
Gso17g1333 676 Gene3D AP2/ERF domain 326 395 IPR036955 GO:0003700|GO:0006355
Gso17g1333 676 Gene3D AP2/ERF domain 429 489 IPR036955 GO:0003700|GO:0006355
Gso17g1333 676 SUPERFAMILY DNA-binding domain 326 395 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1333 Gso-Chr17 13574921 13579702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1333 410 676 AP2-EREBP Transcription Factor Family AT4G37750 26.861 1.38e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso17g1333 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1333 K09285 - gmx:100792451 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0936 5 30659891 30664295 Gso17g1333 17 13574921 13579702 GST
Gso1g1685 1 53499060 53502719 Gso17g1333 17 13574921 13579702 PCT
Gso11g0394 11 3446104 3449912 Gso17g1333 17 13574921 13579702 PCT
Gso17g1333 17 13574921 13579702 Gso1g1685 1 53499060 53502719 PCT
Gso17g1333 17 13574921 13579702 Gso11g0394 11 3446104 3449912 PCT