Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1327 ATGATGGGTCTTGATCAAGATGCTAGCAGCAACTCTGGCCTTCATCTTATTCTAGGGTTAGCTTTGACTGCCACCACCACCACTACTCCATCACTACCATCCATTTCCAACAAGCTTGATCATGTTGATCATCATCACCATCTTATAACTCTTAGACCAACAACAAAGTCACCCTATAATTCCTCTGAGGCTGAACCATCATTAACGTTGGGCTTGTCCCGTGAGAGTTACCTCAAAGTACCCAAAAACATCATAGGACAAAACAGCAACAACAAAGTCTCGTCTTGTGATGACCCTCTTGATCACTTGTCCACACAGACTAATTCACCTCATCACAGTGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTCAGTTGCGAAGAAGTTGTGGATGCAACAGAGATTGATCAGAGGGACCATAGCTGTGAAGGAATAGTAAGAGCCACTGACGAAGACGAAGACGGCACCGCCGCCAGAAAGAAACTTAGGCTTAGTAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCGAAGCAGTTGAATCTTAGGCCACGACAAGTTGAGGTGTGGTTCCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAGACATTAACAGACGAAAACAGACGGTTACAGAAGGAGCTTCAAGAGCTTAAAGCACTGAAACTGGCTCAGCCTCTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCCTCTTGTGAGAGGCTCGGCGGCGGCATCAACGGTGGCGGCGGCGGTTCCCCTAAGACACCATTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAACCCTTCTGCAGCATGTTGA 939 0.4814 MMGLDQDASSNSGLHLILGLALTATTTTTPSLPSISNKLDHVDHHHHLITLRPTTKSPYNSSEAEPSLTLGLSRESYLKVPKNIIGQNSNNKVSSCDDPLDHLSTQTNSPHHSAVSSFSSGRVKRERDLSCEEVVDATEIDQRDHSCEGIVRATDEDEDGTAARKKLRLSKEQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGINGGGGGSPKTPFSMAPKPHFFNPFANPSAAC* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1327 312 Coils Coil 226 256 - -
Gso17g1327 312 Gene3D - 168 218 - -
Gso17g1327 312 SMART halz 220 263 IPR003106 GO:0006355|GO:0043565
Gso17g1327 312 SMART HOX_1 162 224 IPR001356 GO:0003677
Gso17g1327 312 PANTHER - 38 312 - -
Gso17g1327 312 MobiDBLite consensus disorder prediction 88 122 - -
Gso17g1327 312 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Gso17g1327 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 38 312 - -
Gso17g1327 312 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Gso17g1327 312 MobiDBLite consensus disorder prediction 88 120 - -
Gso17g1327 312 CDD homeodomain 164 221 IPR001356 GO:0003677
Gso17g1327 312 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355|GO:0043565
Gso17g1327 312 SUPERFAMILY Homeodomain-like 158 221 IPR009057 -
Gso17g1327 312 Pfam Homeodomain 164 218 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1327 Gso-Chr17 13464679 13466494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1327 2 312 Homeobox Transcription Factor Family AT4G37790 55.486 3.79e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso17g1327 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1327 K09338 - gmx:100807123 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0943 5 30951447 30953154 Gso17g1327 17 13464679 13466494 GST
Gso1g1690 1 53594784 53596529 Gso17g1327 17 13464679 13466494 PCT
Gso11g0387 11 3358133 3359928 Gso17g1327 17 13464679 13466494 PCT
Gso17g1327 17 13464679 13466494 Gso1g1690 1 53594784 53596529 PCT
Gso17g1327 17 13464679 13466494 Gso11g0387 11 3358133 3359928 PCT