Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1320 ATGCGAGTCCTTGTCTTGCTCATGCTCTTCCTCCACTCCCTCCACGCAGCGCGAATCTCAGAATACCGCGCGCTTCTCTCTTTCAAAGCATCTTCCATAACCAACGACCCCACCCATGCTCTCTCCTCCTGGAACTCCTCCACCCCCTTCTGCTCCTGGTTCGGCGTCACGTGCGACTCTCGCCGCCACGTGACCGGCCTCAACCTAACTTCCTTATCTCTCTCCGCCACTCTCTATGACCACCTCTCCCACCTCCCCTTCCTCTCCCACCTCTCCCTCGCCGATAACCAGTTCTCCGGCCCCATCCCGGTTTCCTTCTCCGCCCTCTCCGCCCTCCGCTTCCTCAACCTCTCCAACAATGTTTTTAACCAAACTTTTCCTTCTCAGCTTGCGCGCCTCTCCAACTTGGAGGTTCTCGACCTCTACAACAACAATATGACTGGCCCTTTACCTCTCGCCGTCGCCTCCATGCCGCTCCTCCGCCACCTCCACCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCTCCCGAGTACGGCACCTGGCAACACCTCCGCTACCTCGCCCTCTCCGGCAACGAGCTCGCCGGCTACATCGCCCCGGAGCTCGGTAACCTCTCCGCCCTCCGCGAGCTCTACATTGGCTACTACAACACCTACTCCGGCGGCATCCCTCCCGAGATTGGAAACCTCTCCAACCTCGTACGCCTCGACGCCGCCTACTGTGGCCTCTCCGGCGAGATTCCGGCTGAGCTAGGAAAGCTTCAGAATTTAGACACGCTGTTTCTTCAGGTGAATTCGCTCTCCGGTTCTCTCACTTCCGAGCTGGGGAACTTGAAAAGCCTCAAGTCAATGGACCTTTCCAACAACATGCTCTCCGGAGAGGTTCCGGCGAGTTTTGCGGAGCTGAAGAATCTCACTCTGTTGAACCTGTTCCGGAACAAGCTCCACGGCGCGATTCCCGAGTTTGTTGGAGAGTTACCGGCTTTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACCGGAAGCATTCCTCAGAGTTTGGGGAAAAATGGAAGACTCACTCTCGTTGATCTTTCTTCGAACAAAATAACGGGGACGCTACCTCCATATATGTGTTATGGGAATCGTCTTCAGACTCTGATAACTCTCGGGAACTATTTGTTCGGTCCCATTCCTGATTCGCTTGGGAAGTGCGAGTCTCTGAATAGGATTCGGATGGGAGAGAACTTTCTGAACGGTTCTATTCCGAAGGGTCTATTTGGGCTTCCGAAGCTTACGCAGGTCGAGCTTCAGGATAATCTTCTCACGGGACAGTTTCCCGAGTATGGTTCCATTGCCACTGATCTTGGCCAGATTAGCCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCATCCACCATTGGGAACTTCACTAGCATGCAGAAGCTTCTTCTTGATGGTAACGAGTTTTCAGGTCGAATTCCTCCTCAGATTGGTAGGCTGCAACAGCTTTCGAAGATTGATTTTAGTCATAACAAGTTCTCGGGTCCCATTGCTCCTGAGATAAGTAGGTGCAAGCTTTTGACCTTCATTGATCTCAGTGGTAATGAGCTCTCTGGTGAGATTCCAAACCAGATTACTTCCATGCGGATATTGAATTATCTCAACCTTTCAAGAAACCATCTAGATGGGTCTATTCCAGGTTCCATTGCCTCTATGCAGAGTTTGACTTCTGTTGATTTTTCATACAACAATTTCTCTGGGTTGGTTCCTGGCACTGGCCAATTCGGCTACTTTAACTACACCTCTTTCTTAGGGAACCCTGAACTCTGTGGCCCATATTTGGGTCCTTGTAAAGATGGGGTTGCCAATGGCCCTCGCCAACCCCATGTTAAAGGTCCACTATCTTCTTCATTGAAGCTTTTGCTAGTTATTGGGTTGCTTGTGTGTTCCATTTTATTTGCTGTTGCGGCAATAATCAAAGCCCGGGCTTTGAAGAAGGCCAGTGAAGCTCGGGCATGGAAATTAACCGCGTTCCAGCGCTTGGACTTCACTGTTGATGATGTTTTGGATTGCTTGAAGGAGGACAACATAATAGGGAAAGGGGGTGCTGGCATTGTATACAAAGGGGCAATGCCTAACGGGGATAATGTTGCTGTGAAAAGGTTACCAGCTATGAGCAGAGGATCTTCCCATGATCATGGTTTCAATGCTGAGATTCAGACATTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAATCATGAGACAAATCTCTTGGTGTATGAGTACATGCCAAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGGGGCCACTTGCATTGGTACACAAGGTATAAGATTGCTGTGGAGGCTTCAAAGGGCCTTTGCTATCTACACCATGACTGTTCACCACTCATTGTCCATAGAGATGTTAAATCCAACAACATCCTTCTTGATTCCAATTTTGAAGCACATGTTGCTGATTTTGGGCTCGCTAAATTCCTGCAAGATTCTGGAGCATCTGAATGCATGTCTGCTATTGCTGGTTCTTACGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTTGATGAGAAAAGCGACGTGTACAGCTTTGGAGTGGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCGGTTGGCGAGTTTGGCGATGGTGTGGACATTGTACAATGGGTGAGAAAAATGACAGACTCAAACAAGGAAGGAGTTCTAAAAGTTCTTGATCCTAGACTTCCCTCGGTTCCACTTCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTGTGTGTTGAGGAACAGGCGGTGGAGAGGCCAACTATGCGCGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAACCACCAAGCTCCAAACAAGGAGACTTAACAATCACAGAATCCTCTTTGTCTTCATCAAACAGTTTAGAGTCTCCAACCACGGCATCAAAGGAACCCAAAGATCAACATCCTCCTCAGTCGCCACCAACCGATCTACTTAGCATTTGA 3033 0.4952 MRVLVLLMLFLHSLHAARISEYRALLSFKASSITNDPTHALSSWNSSTPFCSWFGVTCDSRRHVTGLNLTSLSLSATLYDHLSHLPFLSHLSLADNQFSGPIPVSFSALSALRFLNLSNNVFNQTFPSQLARLSNLEVLDLYNNNMTGPLPLAVASMPLLRHLHLGGNFFSGQIPPEYGTWQHLRYLALSGNELAGYIAPELGNLSALRELYIGYYNTYSGGIPPEIGNLSNLVRLDAAYCGLSGEIPAELGKLQNLDTLFLQVNSLSGSLTSELGNLKSLKSMDLSNNMLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGKNGRLTLVDLSSNKITGTLPPYMCYGNRLQTLITLGNYLFGPIPDSLGKCESLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNLLTGQFPEYGSIATDLGQISLSNNKLSGPLPSTIGNFTSMQKLLLDGNEFSGRIPPQIGRLQQLSKIDFSHNKFSGPIAPEISRCKLLTFIDLSGNELSGEIPNQITSMRILNYLNLSRNHLDGSIPGSIASMQSLTSVDFSYNNFSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIIKARALKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGDNVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWYTRYKIAVEASKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTITESSLSSSNSLESPTTASKEPKDQHPPQSPPTDLLSI* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1320 1010 MobiDBLite consensus disorder prediction 961 1010 - -
Gso17g1320 1010 SUPERFAMILY Protein kinase-like (PK-like) 680 957 IPR011009 -
Gso17g1320 1010 Gene3D Transferase(Phosphotransferase) domain 1 764 976 - -
Gso17g1320 1010 Gene3D Phosphorylase Kinase; domain 1 652 763 - -
Gso17g1320 1010 Gene3D Ribonuclease Inhibitor 15 78 IPR032675 -
Gso17g1320 1010 Gene3D Ribonuclease Inhibitor 79 346 IPR032675 -
Gso17g1320 1010 SUPERFAMILY L domain-like 351 611 - -
Gso17g1320 1010 Pfam Protein tyrosine and serine/threonine kinase 688 957 IPR001245 GO:0004672|GO:0006468
Gso17g1320 1010 Gene3D Ribonuclease Inhibitor 351 615 IPR032675 -
Gso17g1320 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 998 - -
Gso17g1320 1010 SUPERFAMILY RNI-like 66 388 - -
Gso17g1320 1010 SMART LRR_typ_2 470 494 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 566 589 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 109 132 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 133 156 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 278 301 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 326 350 IPR003591 -
Gso17g1320 1010 SMART LRR_typ_2 157 183 IPR003591 -
Gso17g1320 1010 ProSiteProfiles Protein kinase domain profile. 686 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1320 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 998 - -
Gso17g1320 1010 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Gso17g1320 1010 SMART serkin_6 686 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1320 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1320 Gso-Chr17 13299542 13303515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1320 12 987 Receptor kinase-like Gene Family AT5G65700 79.349 0.0 1567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso17g1320 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1320 - - gmx:100499646 1969.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0950 5 31125399 31129453 Gso17g1320 17 13299542 13303515 GST
Gso1g1699 1 53682955 53686811 Gso17g1320 17 13299542 13303515 PCT
Gso11g0378 11 3276402 3280891 Gso17g1320 17 13299542 13303515 PCT
Gso17g1320 17 13299542 13303515 Gso1g1699 1 53682955 53686811 PCT
Gso17g1320 17 13299542 13303515 Gso11g0378 11 3276402 3280891 PCT