Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1318 ATGATGCAAATTTCGTCAAACATGTACATGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCTATGGATTCTTCATCAGCATTATTCCAGCTCGAAGATCTTGACTTTGAGTCCTTCTCCGCATCCCCAAAGAACTCTTCCTCTCACAATAAGCGATTATTCAACTCAGAAAGCACACAAAACTCTTTCCACAAAAGTCCTCATGAACAATATTCTGTTGCCCCACCAAGACCAACCAAGCAAAATAAGACTGTGATGAGCACTACTTGGAGTGCTTACAACGCTCATCACCATCATCATGACATGGTGGCTCCGAAAGCTTCTTCTTCTTCGTCCTCCAAAATCATCTCTTTTGATCAGCACTCCAATGCATCTTCTGTTATTTCCCAACAACTCTACAACAACGTGGATGCTGCTGCCAAAGTGAAGAAGCCTAAGATTGAAACTGGGTATGGTGAAAACTTGGATTTTTCAGCAGCTGCTGCGGCTGCTTCTCAAAGTATCTGTGACAACAACAGTTTTCTAGATCACTATGATAATCAAGATAAAAAGGCTGCGGCTTCAACGACTAGAAACCCTACCCAAGCTCAAGATCATGTGATAGCCGAAAGAAAACGAAGGGAAAAGCTAAGTCAGAGGTTCATTGCTCTTTCTGCCATAGTTCCTGGACTCAAGAAGATGGACAAGGCTACCGTATTGGAAGATGCTATAAAGTACGTGAAACAACTGCAAGAAAGGGTAAAGACTCTGGAGGAACAAGCTGTGGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAGATCTGTTGTGTTTGCCGGCGTTGATAGCTCCTCCTCCGACGAAAACTCCGACCAATCGCTCCCCGAAATGGAAGCAAGAATTTCTGGTAAAGAGGTACTAATCAGAATTCACTGCGACAAAAACAGTGGAGGAGCTGCTGCTATACTAAGGGAATTAGAGAAGCATTATCTCACAGTTCAGAGTAGCAGCTTCTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTAAGATGAACAACGACTATTGCTTGACAGCAAAGGATCTCATAAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTGA 1122 0.4269 MMQISSNMYMPEFGMEDPTLFHQYPMDSSSALFQLEDLDFESFSASPKNSSSHNKRLFNSESTQNSFHKSPHEQYSVAPPRPTKQNKTVMSTTWSAYNAHHHHHDMVAPKASSSSSSKIISFDQHSNASSVISQQLYNNVDAAAKVKKPKIETGYGENLDFSAAAAAASQSICDNNSFLDHYDNQDKKAAASTTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVKTLEEQAVDKTVESAVFVKRSVVFAGVDSSSSDENSDQSLPEMEARISGKEVLIRIHCDKNSGGAAAILRELEKHYLTVQSSSFLPFGNNTLDITIVAKMNNDYCLTAKDLIRSLSQCLRQL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1318 373 PANTHER BHLH TRANSCRIPTION FACTOR 1 372 - -
Gso17g1318 373 Pfam Helix-loop-helix DNA-binding domain 201 248 IPR011598 GO:0046983
Gso17g1318 373 Coils Coil 237 264 - -
Gso17g1318 373 MobiDBLite consensus disorder prediction 44 88 - -
Gso17g1318 373 MobiDBLite consensus disorder prediction 44 72 - -
Gso17g1318 373 CDD bHLH_AtNAI1_like 200 272 - -
Gso17g1318 373 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 372 - -
Gso17g1318 373 Gene3D - 189 262 IPR036638 GO:0046983
Gso17g1318 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 258 IPR036638 GO:0046983
Gso17g1318 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Gso17g1318 373 SMART finulus 204 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1318 Gso-Chr17 13259467 13262478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1318 180 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.510 2.70e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1318 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1318 - - gmx:100785572 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0953 5 31198406 31201942 Gso17g1318 17 13259467 13262478 GST
Gso1g1700 1 53698111 53700696 Gso17g1318 17 13259467 13262478 PCT
Gso11g0377 11 3262819 3265288 Gso17g1318 17 13259467 13262478 PCT
Gso17g1318 17 13259467 13262478 Gso1g1700 1 53698111 53700696 PCT
Gso17g1318 17 13259467 13262478 Gso11g0377 11 3262819 3265288 PCT