Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1317 ATGACATCAATGGAGGAATCATGGACTAGTTGGCTATGTGACATGGAACCAGATGATTACAGTTTCATGGGTCAATCGGACATAAAAGTGGATGATGTGAATGGAACTTTAGCATCTCCTCATGATGTAGCCACTGCATTATTAGAGAAGAATCAGCAAAGCTCATTTTCCACAGTAGAGAGTCTCTCTTCAGCGGCTGAGAGTGGCTTGGAGAGGCCTTTCAAGTTACCAAAGATAGAACAACTCTCACAAAAGACAGCTTCCAGTTCCACTCCCTCCTCCTATATTCTCTCCTTTGACAACACAAATCCACCACCGGTTACGGTTGAATCAGCCTCAAAGCCAGGAACCAAGGTTTTGAATCTTGAGAAAGTTTTGCCTTCAAAGAATGAACCAAGACGAGTAGTTACTCAGCAGAACAAGAAAATGGGGTCATTTGCCGGATCTTCTCATCACACACAAGATCACATCATTGCTGAGAGAATGAGGAGAGAAAAAATTAGCCAGAAGTTGATTGCCCTCTCTGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCCGTGTTGGGGGAGGCTATAAGGTATGTGAAGCAGCTGAAGGAGCAAGTGAAGCTGCTGGAGGAGCAGAGCAAAAGGAAAAACGAGGAATCAGTGGTGTTTGCGAAGAAATCTCAGGTTTTTCCTGCGGACGAGGATGTCTCAGACACTTCATCAAACTCCTGCGAGTTCGGAAACTCCGATGATATCTCCACAAAAGCGACTTTGTCACTGCCAGAAGTTGAGGCGAGGGTGTCAAAGAAGAGCGTGCTGATTCGAATCCTCTGCGAGAAGGAAAAGGCAGTGCTGGTGAACATATTCAGAGAGATAGAGAAACTTCATCTCTCCGTCGTCAATAGCAGCGCCTTGTCTTTCGGTTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAGGATGAATTCAACATGGGCGTAAAGGAACTGGCCAGAAACCTTAGAGTAGGGCTGATGCAATTTATGTAA 1026 0.4561 MTSMEESWTSWLCDMEPDDYSFMGQSDIKVDDVNGTLASPHDVATALLEKNQQSSFSTVESLSSAAESGLERPFKLPKIEQLSQKTASSSTPSSYILSFDNTNPPPVTVESASKPGTKVLNLEKVLPSKNEPRRVVTQQNKKMGSFAGSSHHTQDHIIAERMRREKISQKLIALSALIPDLKKMDKVSVLGEAIRYVKQLKEQVKLLEEQSKRKNEESVVFAKKSQVFPADEDVSDTSSNSCEFGNSDDISTKATLSLPEVEARVSKKSVLIRILCEKEKAVLVNIFREIEKLHLSVVNSSALSFGSSVLDTTIVAEMEDEFNMGVKELARNLRVGLMQFM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1317 341 Pfam Helix-loop-helix DNA-binding domain 155 201 IPR011598 GO:0046983
Gso17g1317 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 217 IPR036638 GO:0046983
Gso17g1317 341 PANTHER BHLH TRANSCRIPTION FACTOR 4 341 - -
Gso17g1317 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Gso17g1317 341 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 341 - -
Gso17g1317 341 Gene3D - 150 221 IPR036638 GO:0046983
Gso17g1317 341 SMART finulus 157 206 IPR011598 GO:0046983
Gso17g1317 341 Coils Coil 190 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1317 Gso-Chr17 13238250 13240797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1317 141 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.756 1.46e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1317 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1317 - - gmx:100803386 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0954 5 31257297 31259906 Gso17g1317 17 13238250 13240797 GST
Gso1g1702 1 53717954 53720831 Gso17g1317 17 13238250 13240797 PCT
Gso11g0376 11 3249851 3252732 Gso17g1317 17 13238250 13240797 PCT
Gso17g1317 17 13238250 13240797 Gso1g1702 1 53717954 53720831 PCT
Gso17g1317 17 13238250 13240797 Gso11g0376 11 3249851 3252732 PCT