Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1316 ATGATGGAGGAATTGAACAAACCAATGGACGGATCAGCAACCAGCTGGTTATCCGATTTGGAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCTTGAACTTGAACATGTTTGATGACCGAGAGTTTCTCTCACAAGACATTGCTAGTGCCTTCCAAGAACAGACACAGACCTTGCAACAGCAATCTTTGTCTTCAGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCATCTTTGACTTTGAGAGACCATCCAAGTTGCTGAAAACGACAACAAGCACTAGTTCTAACTTTGACTCATCCACCATCACCAAAACCCTTTCCCCCAAACTTTCCCCATCATCTTCCTTTCAATCTCAGATTCTCTCTTTTGACAACACCAACACCCAGTTTTATGAGTTTCACTGTACCTTAAACCCAACACAGAACGAGATGGTATCGGTGTCAGTGCCCCAAAAGGGAAAACCACGGTTCCCAACTCAAACCCCAAAAGGGTCACCGAAATATCAAAACTTTGAAACAAAAACCTCTCATGCTAAGAGGTCTCCTGCTCATGCTCAAGATCACATCATGGCTGAGAGAAAGCGAAGAGAGAAACTCAGCCAGAGCTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCTATCGAATATGTGAAAGAGCTTAAAGAGCGGTTGACAGTTCTTGAAGAGCAGAGCAAGAAAACAAGGGCAGAATCGATAGTGGTTCTGAACAAGCCAGACCTCTCTGGTGATAATGATTCTTCTTCATGTGACGAGAGCATTGATGCTGATAGTGTCAGTGACTCACTGTTTGAAGTGGAATCAAGAGTATCAGGGAAGGAGATGCTGCTCAAGATCCACTGCCAGAAGCAAAGGGGACTTTTGGTCAAGTTACTGGCTGAGATTCAAAGTAATCACTTATTTGTTGCTAATAGCAGTGTCCTACCCTTTGGTAATTCTATCCTTGACATTACCATTGTTGCTCAGATGGGAGAAAGTTACAATTTGACCACTAAGGAACTTGCCAAGAATCTACGCGTGGCTGCATTGAAGATATTGTCATAA 1116 0.4355 MMEELNKPMDGSATSWLSDLEMDDYNLFPDECPLNLNMFDDREFLSQDIASAFQEQTQTLQQQSLSSECPSKTVSNSSTDETIFDFERPSKLLKTTTSTSSNFDSSTITKTLSPKLSPSSSFQSQILSFDNTNTQFYEFHCTLNPTQNEMVSVSVPQKGKPRFPTQTPKGSPKYQNFETKTSHAKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIEYVKELKERLTVLEEQSKKTRAESIVVLNKPDLSGDNDSSSCDESIDADSVSDSLFEVESRVSGKEMLLKIHCQKQRGLLVKLLAEIQSNHLFVANSSVLPFGNSILDITIVAQMGESYNLTTKELAKNLRVAALKILS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1316 371 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 371 - -
Gso17g1316 371 MobiDBLite consensus disorder prediction 159 200 - -
Gso17g1316 371 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983
Gso17g1316 371 Gene3D - 179 255 IPR036638 GO:0046983
Gso17g1316 371 SMART finulus 195 244 IPR011598 GO:0046983
Gso17g1316 371 CDD bHLH_AtNAI1_like 190 262 - -
Gso17g1316 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Gso17g1316 371 PANTHER BHLH TRANSCRIPTION FACTOR 5 371 - -
Gso17g1316 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Gso17g1316 371 MobiDBLite consensus disorder prediction 179 200 - -
Gso17g1316 371 Coils Coil 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1316 Gso-Chr17 13221409 13223709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1316 88 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.069 2.38e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g1316 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1316 - - gmx:100802862 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0955 5 31385660 31388117 Gso17g1316 17 13221409 13223709 GST