Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1314 ATGTGGAATCCTAGGGACCATGAAGATCAAGATGAGTCCTGGGAGGTCAGAGCCTTCGCAGAAGACACAAGTAACATGATGGGCACCACCTGGCCTCCTAGATTCTACTACTGCAGCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTTGGCGGCCACATGAACGTTCACCGCCGCGACCGCGCTCGCCTCCACCAAGCTTCAGTAGTACCCCACAACAACAACAATAGCAATAATAGCAACATCAACCCCATCTCCTCTTTTTCTAACACACCCTCTTTTCTCAACATCTCTCATCATCATCAGGACCCTTTTGTTGCAAATGGGGGCTTGTGCCGATTGTACCCCTTTCCAAGCCCTAATAACAACAACAATGATCCATTTTCCTCTCTTGCCCACAACAATAATGCATGCGGTGACTTACCTTCCACTGTTTTTTCAGTTTCTTCTTCTCATTCCCAATATTCATCCCTTCAGTACCCTCCAATGAGGGTGCCTAGTTGCTCAGCTACTTCCTTTGATTTCTCGGTGGCTCAACCTGCTGCTGCTTCAGGGAGGAATAATGTTTTCTCTTCTTCTTATTCTGGGAAAGTGGAACAAGAACCCATAATCTCCTCTTCCACACATCATGGCCTCCACCATGCGGAGCTTGAGCTCCGCTTGGGAAATAAATCAACATCAACCTGA 690 0.4783 MWNPRDHEDQDESWEVRAFAEDTSNMMGTTWPPRFYYCSFCRREFRSAQALGGHMNVHRRDRARLHQASVVPHNNNNSNNSNINPISSFSNTPSFLNISHHHQDPFVANGGLCRLYPFPSPNNNNNDPFSSLAHNNNACGDLPSTVFSVSSSHSQYSSLQYPPMRVPSCSATSFDFSVAQPAAASGRNNVFSSSYSGKVEQEPIISSSTHHGLHHAELELRLGNKSTST* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1314 229 PANTHER OS07G0101800 PROTEIN 6 225 - -
Gso17g1314 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gso17g1314 229 PANTHER OS07G0101800 PROTEIN 6 225 - -
Gso17g1314 229 Gene3D Classic Zinc Finger 23 87 - -
Gso17g1314 229 Pfam C2H2-type zinc finger 36 60 - -
Gso17g1314 229 SUPERFAMILY beta-beta-alpha zinc fingers 33 63 IPR036236 -
Gso17g1314 229 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1314 Gso-Chr17 13168772 13170557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1314 1 71 C2H2 Transcription Factor Family AT4G17810 71.429 1.87e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g1314 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1314 - - gmx:102660795 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0958 5 31502789 31504033 Gso17g1314 17 13168772 13170557 GST
Gso1g1704 1 53772051 53773441 Gso17g1314 17 13168772 13170557 PCT
Gso11g0372 11 3207316 3209090 Gso17g1314 17 13168772 13170557 PCT
Gso17g1314 17 13168772 13170557 Gso1g1704 1 53772051 53773441 PCT
Gso17g1314 17 13168772 13170557 Gso11g0372 11 3207316 3209090 PCT