Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1312 ATGGCTGGTTTGGATTTAGGAAGCGCCTCACGCTTTGTTCAAAACCTTCACAGACCAGACTTGCACTTGCAACAAAATTTCCAGCAGCACCAGGACCAGCAGCACCAGCGTGATTTGGAGGAGCAGAAAACTCCTCCGAATCACAGAATGGGGGCGCCGTTCGACGATGATAGCGATGATAGAAGCCAGGGCCTGGAGCTCACTTCAGGTCCTGGCGACATCGTCGGACGGCGCCCGCGTGGCAGGCCTCCTGGGTCGAAGAACAAGCCTAAGCCGCCCGTCATAATCACCCGGGAGAGCGCCAACACGCTGAGGGCGCACATCCTCGAGGTCGGAAGCGGCTCCGACGTCTTCGACTGTGTCACCGCGTATGCCCGGCGGCGCCAGCGTGGGATCTGCGTCCTCAGTGGCAGCGGCACCGTCACCAATGTCAGTCTCCGGCAGCCTGCAGCTGCCGGTGCCGTCGTCACGCTGCACGGCAGGTTCGAGATTCTCTCCCTCTCTGGCTCGTTCCTCCCGCCGCCGGCTCCGCCGGGAGCCACCAGCCTCACAATCTACCTGGCCGGCGGGCAGGGGCAGGTTGTCGGAGGAAACGTCATCGGAGAATTAACCGCAGCAGGGCCAGTAATCGTCATCGCAGCGTCGTTCACCAACGTGGCTTACGAGAGGTTACCCTTAGAAGAAGATGAACAACAGCAGCAACAACAGCAGCTTCAGATTCAGCCACCTGCAACGACGTCGTCTCAAGGAAACAACAACAACAATAACCCTTTCCCCGACCCTTCTTCAGGACTTCCCTTCTTCAATTTACCACTCAATATGCAGAATGTTCAGTTACCAGTTGAGGGTTGGGCTGTAAACCCTGCTTCACGTCCACAACCTTTTTGA 888 0.5788 MAGLDLGSASRFVQNLHRPDLHLQQNFQQHQDQQHQRDLEEQKTPPNHRMGAPFDDDSDDRSQGLELTSGPGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVIGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQQQQQLQIQPPATTSSQGNNNNNNPFPDPSSGLPFFNLPLNMQNVQLPVEGWAVNPASRPQPF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1312 295 PIRSF ESCAROLA 13 293 IPR014476 GO:0003680
Gso17g1312 295 MobiDBLite consensus disorder prediction 230 269 - -
Gso17g1312 295 MobiDBLite consensus disorder prediction 227 269 - -
Gso17g1312 295 ProSiteProfiles PPC domain profile profile. 101 237 IPR005175 -
Gso17g1312 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 292 - -
Gso17g1312 295 MobiDBLite consensus disorder prediction 33 63 - -
Gso17g1312 295 MobiDBLite consensus disorder prediction 27 94 - -
Gso17g1312 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 292 IPR014476 GO:0003680
Gso17g1312 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 232 - -
Gso17g1312 295 CDD DUF296 105 216 IPR005175 -
Gso17g1312 295 Gene3D - 104 242 - -
Gso17g1312 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 218 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1312 Gso-Chr17 13123124 13126571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1312 1 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 65.495 3.98e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1312 - - pvu:PHAVU_003G230600g 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0959 5 31612209 31613767 Gso17g1312 17 13123124 13126571 GST
Gso1g1705 1 53791637 53792875 Gso17g1312 17 13123124 13126571 PCT
Gso11g0371 11 3187923 3189355 Gso17g1312 17 13123124 13126571 PCT
Gso17g1312 17 13123124 13126571 Gso1g1705 1 53791637 53792875 PCT
Gso17g1312 17 13123124 13126571 Gso11g0371 11 3187923 3189355 PCT