Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1310 ATGGACGTACGCGAGACGCCCCGCCCACCGCCGCCCACCATGATGGTGGGCCCTACATCCTACGGTTCCACCAACCTCGGCCCTAATTCCTCCTCCTCCTCCGCCGCCGCCATGCTGGCCCCCGCCACCGCGCGATTCCCCTTTGGCGCCGTTCCTCCGCCGCAACAGCATCAGCCTCCGCCCTCGTCGGAGCCCTTCCCCGCCTCCGCCGCATATGACGGCTCCTCCTCGCCGATGAAGCCCTGCTCCCTCGCCAAGAAGAAGCGCGGGCGGCCCCGCAAATACTCGCCGGACGGTAGCATTGCCCTCGGCCTCGCTCCCACCCATACCTCGCCGCCCGCCTCCGCAGCCGCCGGAGGCGGAAGCGCCGGCGATTCGGCCGGCACGGCGTCTGCCGATGCTCCGGCGAAGAAGCACCGCGGAAGGCCGCCCGGGTCTGGGAAGAAACAGCTTGATGCCCTTGGTGCTGGTGGGGTTGGATTCACTCCCCACGTGATCATGGTGGAGTCTGGCGAGGACATCACAGCAAAAATAATGGCCTTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTTTCTGCTATTGGTGCAATCGGTAATGTTACCCTTCGACAGCCTGCAATGTCTGGTGGTATTGCTACCTACGAGGGCCGCTTTGAGATTATATCTTTATCAGGTTCTTTGCAGCAATCTGAAAATAACGGTGATCGTAGCAGAACATGCACTTTGAATGTAACTCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGTGGAGTCGCTGGAACGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATTGCGTTTGCGAAAAAGTCGAGCTCAAGTGCCCTGAAATCTGGGTCTTCTTCTGCACCACCACCCCAAATGCTAACCTTTGGTGCACCCATGACCCCAAATAGTCCTACCTCTCAAGGGCCTTCAACTGAATCCTCTGAGGAACAGGATCATAGTCCATTTTGTAGGGGGCCAGGGCCTGGACATGGACTCTATAATAATGCTAGCCAGCCCGTTCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAATCTCATCAGTGA 1098 0.5783 MDVRETPRPPPPTMMVGPTSYGSTNLGPNSSSSSAAAMLAPATARFPFGAVPPPQQHQPPPSSEPFPASAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGSIALGLAPTHTSPPASAAAGGGSAGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVIMVESGEDITAKIMAFSQQGPRTVCILSAIGAIGNVTLRQPAMSGGIATYEGRFEIISLSGSLQQSENNGDRSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIAFAKKSSSSALKSGSSSAPPPQMLTFGAPMTPNSPTSQGPSTESSEEQDHSPFCRGPGPGHGLYNNASQPVHNMPMYHHPLWAGQSHQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1310 365 MobiDBLite consensus disorder prediction 287 346 - -
Gso17g1310 365 MobiDBLite consensus disorder prediction 287 324 - -
Gso17g1310 365 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Gso17g1310 365 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Gso17g1310 365 MobiDBLite consensus disorder prediction 1 16 - -
Gso17g1310 365 CDD DUF296 162 276 IPR005175 -
Gso17g1310 365 MobiDBLite consensus disorder prediction 52 66 - -
Gso17g1310 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 279 - -
Gso17g1310 365 ProSiteProfiles PPC domain profile profile. 157 298 IPR005175 -
Gso17g1310 365 MobiDBLite consensus disorder prediction 1 155 - -
Gso17g1310 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 328 IPR039605 GO:0003680
Gso17g1310 365 MobiDBLite consensus disorder prediction 17 38 - -
Gso17g1310 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Gso17g1310 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 58 328 - -
Gso17g1310 365 Gene3D - 163 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1310 Gso-Chr17 13103274 13109572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1310 85 365 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 51.290 1.66e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1310 - - gmx:100789717 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0962 5 31628129 31633333 Gso17g1310 17 13103274 13109572 GST
Gso1g1706 1 53804398 53808045 Gso17g1310 17 13103274 13109572 PCT
Gso11g0369 11 3171579 3175569 Gso17g1310 17 13103274 13109572 PCT
Gso17g1310 17 13103274 13109572 Gso1g1706 1 53804398 53808045 PCT
Gso17g1310 17 13103274 13109572 Gso11g0369 11 3171579 3175569 PCT