Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1306 ATGCCAGTTCCACTTGCCCCCTACCCAACACCGCCAGCTCCTTATACACCACCAGCTAATGGTGTACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTTTCCAGTTGGAGCCACCTCCGTGTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTATGTGGAGGTTGCCATACTTTACTCATGTACATCCGGGGCGCGACAAGTGTGCAATGTTCATGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTGGCGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 438 0.5 MPVPLAPYPTPPAPYTPPANGVQSQLVCSGCRNLLVFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQYGARSVKCAVCNFVTSVGATASTTEQKFST* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1306 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Gso17g1306 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Gso17g1306 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Gso17g1306 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Gso17g1306 145 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Gso17g1306 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Gso17g1306 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Gso17g1306 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Gso17g1306 145 PANTHER PROTEIN LOL1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1306 Gso-Chr17 13063551 13066111 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gso17g1306 zf-LSD1 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1306 - - gmx:100306356 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0967 5 31682340 31684843 Gso17g1306 17 13063551 13066111 GST
Gso1g1709 1 53835658 53838289 Gso17g1306 17 13063551 13066111 PCT
Gso17g1306 17 13063551 13066111 Gso1g1709 1 53835658 53838289 PCT