Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1303 ATGGGTTGCACCATGAGGGAAAAGCACATCAGAGCTAATCGGAGACCCCGATCGGTGAAGCCGGACCCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGCCTCAAGCCCTTCAAATACCATCTGGGTCTCAACGATTCTTCCCAGAGTCCGAATTCGATCCCTAATGCTGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAATTTATATACAACGAAGCTGTTTCGAAGCTTGTTGCGTTGGGATATGATGAGGATGTTGCTGTTAAGGCCATACTGCGAAATGGACATTGTTATGGTGGCATGGATGTGCTGACGAATATTTTGCACAATTCCTTGGCTTTTTTGAATAGTAATAGTGATAGTGGTGGTGGTGGTGGTGGTGCTAGTTATAATAGTAATGGTGGGAATTTGGATGAGTCTGACCCTGTGTTCTCTGATTTGAGGCAGTTGGAGGAGTACTCTTTGGCGGGTATGCTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGCAAAGGGGATGCCATGTGGTGTTTGCTCATGAGTGATCTTCATGTTGGGAGGGCTAGTGCTATGGAGATTCCGGAGCCGGGCAATGGGAGCACTGTGCCGGCTGCCGGCGAGGTTGGTGCCAATTTGGTTGGTGCTATGGCGCCAGCTTTGTGTAGGTTTCATGGGGGGTGGGGATTTGGAAGTGGGGGAGGCTTGGAATTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAACGAGACATTGAGTTTCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTGTTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAATTGCAGGCACAGGTGAAGGTCGTTCCCGGCCGGAGTACAGTGCCTAGTTTGGATTCTTCGGCTGCATCTGGGACAGAAGTCCCGGCTGAGCAGTCCGGAGGAAATTCACAGAATCTTGATAGCCAAGATGCTGTGAATTCGGTGCAGAGTAAATTTGGTGATTTGAATCTTGATGAGAATTTGGAGTTAGTGGCGGAGGATCAGAAGGATGAGGTGATAGTTACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAGTGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGAAAACCAGTGCTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGGGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCGGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTGAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGATGAAAAAGAGAAGATATTAAAGACAAAAGAAATATTGGTTCAGATTAGACAATGTCAAAAGGAAGCTGAGGTTAAGTGGAAGGAGGAGCTGAAGGCTAAAGAGGAAGCCCTAGCACTAGTTGAGGAGGAACGACACTGTAAGGAAGCAGCCGAGTCTAACAATAAGAGGAAGCTCGAGGCATTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGACTCGAGCAGGAGCTTTCACGGCTTAAAGCATCTGCTCAGTCTGCTGAGTTGCATAACCAGTCAAGCACTTCACCTACAAGCGACTGCAAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAAGAATTAGATAATCTGGAGGACTTTTCTGAGAAAGAAATAAATAGCAACAGAGAATGCATTGTATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCATGTGCGCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGCAAGGCTACTTGTCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2166 0.4584 MGCTMREKHIRANRRPRSVKPDPDSCDKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILRNGHCYGGMDVLTNILHNSLAFLNSNSDSGGGGGGASYNSNGGNLDESDPVFSDLRQLEEYSLAGMLCLLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPEPGNGSTVPAAGEVGANLVGAMAPALCRFHGGWGFGSGGGLEFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQVKVVPGRSTVPSLDSSAASGTEVPAEQSGGNSQNLDSQDAVNSVQSKFGDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVSERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPVLEDTTMKRLSEMENALRKASGQLDLGNAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKEKILKTKEILVQIRQCQKEAEVKWKEELKAKEEALALVEEERHCKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHNQSSTSPTSDCKGAKPQRETIARLLQELDNLEDFSEKEINSNRECIVCMKDEVSIVFLPCAHQVMCASCSDEYGRKGKATCPCCRVQIQQRIRVFGASS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1303 721 MobiDBLite consensus disorder prediction 1 30 - -
Gso17g1303 721 PANTHER OS05G0141500 PROTEIN 1 720 IPR046934 -
Gso17g1303 721 Coils Coil 595 622 - -
Gso17g1303 721 MobiDBLite consensus disorder prediction 616 635 - -
Gso17g1303 721 MobiDBLite consensus disorder prediction 616 637 - -
Gso17g1303 721 Coils Coil 503 537 - -
Gso17g1303 721 Coils Coil 461 488 - -
Gso17g1303 721 MobiDBLite consensus disorder prediction 16 30 - -
Gso17g1303 721 SUPERFAMILY RING/U-box 648 713 - -
Gso17g1303 721 Pfam Zinc finger, C3HC4 type (RING finger) 664 712 - -
Gso17g1303 721 Coils Coil 549 576 - -
Gso17g1303 721 MobiDBLite consensus disorder prediction 319 352 - -
Gso17g1303 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 718 IPR013083 -
Gso17g1303 721 ProSiteProfiles Zinc finger RING-type profile. 667 707 IPR001841 -
Gso17g1303 721 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 720 - -
Gso17g1303 721 Pfam Family of unknown function (DUF6592) 82 208 IPR046527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1303 Gso-Chr17 13012305 13018203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1303 641 717 C3H Transcription Factor Family AT1G73950 36.905 1.83e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1303 - - gmx:100797917 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0968 5 31813132 31820387 Gso17g1303 17 13012305 13018203 GST
Gso11g0366 11 3149963 3153650 Gso17g1303 17 13012305 13018203 PCT
Gso17g1303 17 13012305 13018203 Gso11g0366 11 3149963 3153650 PCT