Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1299 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCACCCAACTGATGAAGAATTAGTGGGCTACTACCTTAAGAGAAAAGTGGAGGGGATTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTGTACAAATTTGATCCGTGGGAATTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATTTGGAATGGTTTTTCTTCTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCCACCAAAGCTGGGTATTGGAAAGCCACTGGTAAAGACAGAAAGGTGGTGTGCCAGTCTAATCCATCCACTGTAGGGTACCGCAAGACCTTAGTTTTCTATCTTGGAAGGGCCCCTTTGGGGGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGCGATGATCTAGGGCAAGCCACACCATGTTTCCAGGGTGGTTTTGCCTTGTGCCGAGTTATTAAGAAGAATGAGAAGGCAAGTGCATCACAGGGAGAACACAAGGGCAAAAGGGCTGGAAGCAGTTCCATCAATGGGAGTGACACCTCAGTGAAATTCTCTAGTGAGCCATTCAGCAACTCTGGTGATGCTTCCTCTCAAGCAAGTCATCTGAACAACGAGAGCCGTTATTCAAGCCCTATAACTTCTCCATACAATGTGGCTCCAATGGGAGAGTTTAACCAAGCTTCTGTGGAAACCACCAATCCTTCAAACTTCTGGATCTCCCCTGATATGATTCTTGATTCATCAAAGGACTACTCTCAATTACAAAATGCCATGGCTGAATGTTTTCCACGGTATGACTTACCAAGTGTGATGGCACCATGGCAATCATTGGAACATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGGGGAGGTTGAATTTGCTGATAATCTCAGTCAAATTGGCTGCACTAGACAATGGAATTCCATGGACCTTTATGGAAATGGGGATGTCCCTTATGATGGTTATGATCAAGTTAACTCAATCTCATATCCTGAACCCTTCTAA 1029 0.4461 MGGATLPPGFRFHPTDEELVGYYLKRKVEGIEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDDLGQATPCFQGGFALCRVIKKNEKASASQGEHKGKRAGSSSINGSDTSVKFSSEPFSNSGDASSQASHLNNESRYSSPITSPYNVAPMGEFNQASVETTNPSNFWISPDMILDSSKDYSQLQNAMAECFPRYDLPSVMAPWQSLEHPETSSSLSYSNFNGEVEFADNLSQIGCTRQWNSMDLYGNGDVPYDGYDQVNSISYPEPF* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1299 342 MobiDBLite consensus disorder prediction 170 213 - -
Gso17g1299 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 342 - -
Gso17g1299 342 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Gso17g1299 342 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Gso17g1299 342 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 342 - -
Gso17g1299 342 MobiDBLite consensus disorder prediction 162 213 - -
Gso17g1299 342 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Gso17g1299 342 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1299 Gso-Chr17 12952349 12955336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1299 1 300 NAC Transcription Factor Family AT4G17980 55.298 6.74e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso17g1299 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1299 - - gmx:100796849 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0970 5 31879735 31882445 Gso17g1299 17 12952349 12955336 GST