Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1290 ATGCTGATAAGTGGTATTGATCGATCTGTTACTTTCTGTGGGAGACTGAGAAACGATGCCAAGCCAGCTATGGTTTTCACTGCCAATGACTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTCCACGAGAGAGACAACATTTCTGCTGCAGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGACGCCTTGTCAGTGATCTCAAGTGGACTTGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTGCCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAACATGTGGTTCACAAGGCATTCAATGCTGGGGCAAACATCCTGTCTGAATCACTTAAACCTGTCAAAGAATCAGTAGCGTCCATGTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAGTATCCATTGATATAGAGAAAGTATCCAGCTTTGTTGATAATGATCATGAGCTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCAAGGGACAAGATTGTTGGACGATGGTGATTGCCAAGAGCAGGCTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGTAATTTGAATGCTGAAATTACTCCTCAACAAAGGAAATCTGAAATTACTTTGGTTAGGGAGGAAGTGGATATAGTTGATGCTTCCATGGGTGAGAGTGTTGCTTCTCCACATACACAAAAAAGAAAAGTTCTAAGCAACACTGACAGAAATACAAAAGCTTCAAATAAAGTAGGTGTTCATAGTGATTCATGTGAGATAAGAGGAAAGCGGAAAAAGATAAAAGTAGACTGGACACCTGAGCTTCACAAAAAGTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCAAGCCATTCCTTCTCGAATATTGGAATTAATGAAAGTGGAGAGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGGCAAATCTTGCCCAAGGAAGAAGAACGAAAATGGTCGAATCAAAGAGAAAGGAGCTATAGTGTTCAAAGACCAATTATGGCATTTCCTCCATATCATTCTAATCACACCCATCCACTGCCTCCTGTATATCCTATGTGGGGACAATCTGGCGGTCCAATGGCTGGCATGCAGATTTGGGGATCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAAAATTGGCGCTGGAAACCATTTCCAGGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAATACCACCTCAAGCTCCTGGTTTTCCTTACTCTCAGAATATGCCTGCATTGCTCAATGCTGATGCAGCGGATCACACATTTACCATGCCACAAAGTTCCTTCGAGCATTATCTGGCAGAGGAGGTAGTTGACAAGGTTGTTAAAGAGGCAATAAACAAACCATGGCTACCCTTGCCCTTGGGTTTGAAACCTCCTTCCACAGAAAGTGTGTTGGCTGAGCTATCAAGGCAAGGCATTTCCAACATCCCTCCAAAGGGTTCAAAATCATGCTGA 1731 0.4327 MLISGIDRSVTFCGRLRNDAKPAMVFTANDLQEWKDFPKGLKVLLHERDNISAAEIRAKLEAMDYNVSTFCDENDALSVISSGLESFHIAIVEVSSSSAQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGANILSESLKPVKESVASMLQLQTDNEQHESRVSIDIEKVSSFVDNDHELSPGNDKYPAPSTPQLMQGTRLLDDGDCQEQANCSTEKESGEHDGESKSVETTCGNLNAEITPQQRKSEITLVREEVDIVDASMGESVASPHTQKRKVLSNTDRNTKASNKVGVHSDSCEIRGKRKKIKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVESLTRHNVASHLQKYRMHKRQILPKEEERKWSNQRERSYSVQRPIMAFPPYHSNHTHPLPPVYPMWGQSGGPMAGMQIWGSPGYPLWQPTAENWRWKPFPGMHADAWGCPVLPIPPQAPGFPYSQNMPALLNADAADHTFTMPQSSFEHYLAEEVVDKVVKEAINKPWLPLPLGLKPPSTESVLAELSRQGISNIPPKGSKSC* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1290 576 Gene3D - 334 395 - -
Gso17g1290 576 MobiDBLite consensus disorder prediction 297 325 - -
Gso17g1290 576 MobiDBLite consensus disorder prediction 206 230 - -
Gso17g1290 576 Pfam Myb-like DNA-binding domain 340 389 IPR001005 -
Gso17g1290 576 PANTHER TRANSCRIPTION ACTIVATOR GLK1 24 574 IPR044825 GO:0003700|GO:0045893
Gso17g1290 576 Gene3D - 38 158 - -
Gso17g1290 576 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 337 392 IPR006447 GO:0003677
Gso17g1290 576 SUPERFAMILY Homeodomain-like 336 394 IPR009057 -
Gso17g1290 576 SUPERFAMILY CheY-like 39 158 IPR011006 -
Gso17g1290 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 24 574 - -
Gso17g1290 576 ProSiteProfiles Response regulatory domain profile. 42 155 IPR001789 GO:0000160
Gso17g1290 576 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 393 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1290 Gso-Chr17 12764097 12770963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1290 24 576 Response Regulator Gene Family AT4G18020 49.060 7.54e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso17g1290 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1290 - - gmx:100777535 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0609 5 7312526 7319417 Gso17g1290 17 12764097 12770963 GST
Gso1g1720 1 53970993 53977647 Gso17g1290 17 12764097 12770963 PCT
Gso11g0357 11 3048026 3054712 Gso17g1290 17 12764097 12770963 PCT
Gso17g1290 17 12764097 12770963 Gso1g1720 1 53970993 53977647 PCT
Gso17g1290 17 12764097 12770963 Gso11g0357 11 3048026 3054712 PCT