Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1288 ATGGAAGCCGTCCAAGTCATATCCACCACTACAATCAAGGCACCACCGAGTCACAATAACCATGACTCAGTTCAGAAAATCGATTTAACTCCCTGGGATCTTCAGTTCCTCCCAATTGAAACCATTCAGGAAGGCCTTCTTTTTCGCAACAAACACACAAAAAACCAAATCGAGCACCTCCAACACTCCCTTTCATCCACTCTCGCCTTCTTTCCACCCCTCGCAGGTCGTCTTGTCATTCTCCAACACCACGACAACACTGTCTCGTCCCACATCGTATGCAACAACGCAGGAGCACTCTTTGTCCACGCCGTTGCAGACAACACCACTGTCGTTGATATTCTTCAACCCAAATACGTTCCTCCCATTGTTTGCTCCTTCTTTCCGCTCAACGGAGTTAAAAACCACGAAGGCACGTCACAGCCAGTGTTGGCAGTGCAAGTGACGGAGCTACTTGACGGCGTCTTCATCGCCTTCACAATCAACCACGTGGTTGCAGACGGCAAGTCATTTTGGCATTTCGTGAATTCCTGGGCTGAAATCTCACGCGGTATCCCTAAAATATCAAAAATCCCTTTTTTCGAACGTTTCTTTCCCGTTGGCATTGACCGCGCCATACGGTTTCCGTTCACAAAGGTGGAAGAAAAAGAAGAAGGAGAACACTCACAAAACCTTGAACCAAAAACTCTCTCTGAGAGGGTCTTCCATTTCACCAAGCGAAAAATCTCGGAACTGAAATCAAAAGCCAACGCAGAGGCCAACACGGACAAAATATCTTCTCTGCAGGCGGTTTTAACTCTCCTTTGGCGCGCTGTGAGTCGTTGCAAACATATGGGGCCACAAGAAGAGGTTCATTTTGTTCTTCTGATTGGAGCTAGACCAAGGCTTATTCCACCACTCGCAAATGATTATTTCGGAAACGCAGCACTGGTTGGTCGTGCTACCATGAAAGCAGAAGAACTATTACAGGAGGGTGGATTCGGAATGGGTGCTTCGGAGATAAACAAGGTGATTTCTTCGCACTCTCATGAGAAGGTGAGGAGCTACTACGAGTCTTGGGTGAGAACCCCAAGGCTTTTTGCGATAGGTCGCCTCGCTAATAGTAACTCATTGGCCACTAGCGGTTCTCCAAGGTTCAACGTTTACGGCAATGATTTTGGGTGGGGAAAGCCCCTGACCGTAAGAAGTGGCGGCGCAAATAAAAGTAGCGGAAAAATTACTCTGTTTGGTGGCGCTGAAGAAGGTTCTATGGACATTGAAGTGTGCCTTCCTTATGTGATTCTCGAGGCAATTGGAAATGACTCTGAGCTCATGGATGCCATTTCCAACTAG 1332 0.4752 MEAVQVISTTTIKAPPSHNNHDSVQKIDLTPWDLQFLPIETIQEGLLFRNKHTKNQIEHLQHSLSSTLAFFPPLAGRLVILQHHDNTVSSHIVCNNAGALFVHAVADNTTVVDILQPKYVPPIVCSFFPLNGVKNHEGTSQPVLAVQVTELLDGVFIAFTINHVVADGKSFWHFVNSWAEISRGIPKISKIPFFERFFPVGIDRAIRFPFTKVEEKEEGEHSQNLEPKTLSERVFHFTKRKISELKSKANAEANTDKISSLQAVLTLLWRAVSRCKHMGPQEEVHFVLLIGARPRLIPPLANDYFGNAALVGRATMKAEELLQEGGFGMGASEINKVISSHSHEKVRSYYESWVRTPRLFAIGRLANSNSLATSGSPRFNVYGNDFGWGKPLTVRSGGANKSSGKITLFGGAEEGSMDIEVCLPYVILEAIGNDSELMDAISN* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1288 443 Gene3D - 2 204 IPR023213 -
Gso17g1288 443 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 3 441 - -
Gso17g1288 443 Gene3D - 210 431 IPR023213 -
Gso17g1288 443 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 3 441 - -
Gso17g1288 443 Pfam Transferase family 4 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1288 Gso-Chr17 12705775 12707351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1288 60 423 Monolignol Biosynthesis Gene Families AT5G48930 27.586 8.35e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1288 - - gmx:100500257 892.108