Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1282 ATGGCTCTCTCTCTTTTGTATCCCCTTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCATTTGTTCAATCTCGTGCAGCATTTTACCCAAACTCTCAAGAAAATGGCACAGATGTTGGTGCATGTGAATTTGGTTCCTTTGGTGCTACGGTTAATGGTGGCGACGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAAGTAAGATGTAGCAATAGTGCTTTATGCTCAGACAACGGTGTGACTGTGGTTATAACTGACTCAGGCTCAGGTCATAACACTGATTTCATTCTTAGCCAACGAGCCTTTGGTAGAATGGCTCTCAACACTGACGCTGCTGCATCTCTATTAGCTCTTGGCGTACTTGATATTCAATATAGACGTGTCTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCATATGGTTTCAACAAGGAAGTAGAGACATAACTGCTGTTCAGCTTTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGACCGGAGTCATGGAGCAGTTTGGACCACTACAGCTCCACCAAGTGGACCTTTGACTTTGAGGATGTTGTTTAGCCCTGAAGAAGAGGGAGAAGAAACATGGGTGGTTCCTGTTAATAACATACCACAAGACTGGAAGGCTGGACAAACATACGACTTAGGGGTACAAGTGGACCAATAG 756 0.4365 MALSLLYPLLLATFLFMQTLADTSFVQSRAAFYPNSQENGTDVGACEFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSALCSDNGVTVVITDSGSGHNTDFILSQRAFGRMALNTDAAASLLALGVLDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVIWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLTLRMLFSPEEEGEETWVVPVNNIPQDWKAGQTYDLGVQVDQ* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1282 251 Pfam Lytic transglycolase 63 137 IPR009009 -
Gso17g1282 251 Gene3D - 144 249 IPR036749 -
Gso17g1282 251 Gene3D - 13 143 IPR036908 -
Gso17g1282 251 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Gso17g1282 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Gso17g1282 251 Pfam Expansin C-terminal domain 149 227 IPR007117 -
Gso17g1282 251 PANTHER EXPANSIN-B3 8 250 - -
Gso17g1282 251 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 8 250 - -
Gso17g1282 251 SUPERFAMILY PHL pollen allergen 147 244 IPR036749 -
Gso17g1282 251 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gso17g1282 251 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Gso17g1282 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gso17g1282 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1282 Gso-Chr17 12618455 12620740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1282 5 244 Expansin Gene Family AT4G17030 42.739 2.95e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1282 - - gmx:100791557 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0597 5 7107340 7109654 Gso17g1282 17 12618455 12620740 GST
Gso1g1726 1 54033957 54036830 Gso17g1282 17 12618455 12620740 PCT
Gso11g0351 11 3013850 3015956 Gso17g1282 17 12618455 12620740 PCT
Gso17g1282 17 12618455 12620740 Gso1g1726 1 54033957 54036830 PCT
Gso17g1282 17 12618455 12620740 Gso11g0351 11 3013850 3015956 PCT