Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1271 ATGCAGTACACGCAACAACCACTTCTCTTCATTTTCTTGTTGATTCTTGGAGCCACGTCGTTCATGGCCATGGATTTCACCTTCTTCTTCTTCTTCTTCATCTTGACGTTGTTATTGTGGGAGGTGGCAGTAGCAGACAACGTGAGCTTCGACTTCCCTTCTTTCACTCTCAACAACATCACCCTCCTCGGCGATTCCTCTCTCAGAAACAACGGCGTCGTAAGACTCACCAACGCCGCCCCCACCTCCAGCACCGGCGCCGTTGTCTACAGCCAACCTGTCTCCCTCTTCCACGCCTCCTTCTCCACCACCTTCTCCTTCTCCATCCACAACCTCAACCCCACCTCCTCCGGCGACGGCCTCGCCTTCTTCCTCTCCCCCAACACCACCCTCTCCCTCTCCGAACCCCTCGGCCTCCCCACCGCCACCGGCTTCGTCGCCATCGAATTTGACACGCGCTCTGACGACCCGAACGAGAACCACGTGGGCTTCGACGTGGACTCCATGAAGTCCCTCGTAACCGGAGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCGCTGCATTGATCGACTACAACACCCAATACACATTACTGAACGTTTTCTTGAGCTATTCACGTTTTTCAAAACCCCTCCTACCTCTCCTCTCTGTCAAGTTCGATCTTTCTCATCACCTCAGAGACCCCGTCTACGTTGGCTTCTCGGCTTCCACTCAAGGAAGCATCGAGCTTCACCATATAAAAAATTGGACCTTTCACGCCAAAACAATGACCACCACGTTGCACCACCCTCATAACGTTTCCGTGGTGGAAATTTCACGTTCCGGTGCCACCAAGAAGCGCGACAAGAGGGTTGTTGGCATTGTTGTGGATTCTGTTTCTTTCTTTGTGGCTTTCACAATATTCTTGGGGTATGTTTTTGTTCGGAGATGGAAGATTGGTGGGAGAAAAGAGAGAGAGAAAGACAAGTTCCAGAAGAGTGGTTTCGTGGCGTATCCTAGGGAGTTTCATTACAAAGAGTTGAAGTCTGCTACAAGAGAGTTTCACCCTATTAGGATTGTTGGGCATGGATCTTTCGGAGCAGTGTATAAGGCTTTCTTTATATCTTCTGGAACCATCGCTGCTGTGAAAAGGTCAAGACATTCTCACGAAGGGAAGACTGAGTTTCTGGATGAACTCAACACCATTGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTTCAAGGTTGGTGCGTTGAGAAGGGGGAGTTGCTGCTTGTGTATGACTTCATGCCCAACGGAAGCTTGGACAAGATGCTTTACAAGGAACCTGAAAGGGGGAAGCTTTTGAGTTGGTCTCACAGGCAAAACATTGCACTAGGGTTGGCTTCTGTGCTGGTTTACCTTCACCAAGAGTGTGAGCAGAGAGTTATTCACAGGGATATTAAGGCTGGGAACATATTGCTGGATGGAAATTTCAACCCTAGGTTAGGGGATTTTGGATTGGCAAAGCTTATGGATCATGATAAGGGCCCTGTTTCCACTTTAACTGCTGGAACAATGGGGTACCTTGCACCTGAGTATCTTCAGTATGGAAAAGCCACTGATAAGACTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGGGGTGGCTTGTGGGAGGAGGCCAATTGAAAGAGAAGGGTCTAAGATGTTGAATCTGATTGATTGGGTTTGGCGCCTTCACTCTGAAGGAAAAGTGATTAAGGCAGCTGATAAAAGGTTGAATGGGGAGTTTGAGGAGGAGGAGATGAGGAAATTGTTGATTTTGGGGTTGAGTTGTGCTAATCCTGATAGTGCTGAGAGACCCTCCATGAGGAGAGTGCTGCAAATTCTAAACAATGAGGCTGCACCACTTGCTGTACCAAAAGTGAAGCCAACACTCACCTTTTCTTCTGACCTACCTCTGCCTCTCACTATTGAGGACATTGTTTCAGAGGCTGATCAAGAGTCTATGTGCGAGATCAAAATTGACTGA 2007 0.4883 MQYTQQPLLFIFLLILGATSFMAMDFTFFFFFFILTLLLWEVAVADNVSFDFPSFTLNNITLLGDSSLRNNGVVRLTNAAPTSSTGAVVYSQPVSLFHASFSTTFSFSIHNLNPTSSGDGLAFFLSPNTTLSLSEPLGLPTATGFVAIEFDTRSDDPNENHVGFDVDSMKSLVTGDPILHGIDLKSGNTIAALIDYNTQYTLLNVFLSYSRFSKPLLPLLSVKFDLSHHLRDPVYVGFSASTQGSIELHHIKNWTFHAKTMTTTLHHPHNVSVVEISRSGATKKRDKRVVGIVVDSVSFFVAFTIFLGYVFVRRWKIGGRKEREKDKFQKSGFVAYPREFHYKELKSATREFHPIRIVGHGSFGAVYKAFFISSGTIAAVKRSRHSHEGKTEFLDELNTIAGLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKMLYKEPERGKLLSWSHRQNIALGLASVLVYLHQECEQRVIHRDIKAGNILLDGNFNPRLGDFGLAKLMDHDKGPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLGVACGRRPIEREGSKMLNLIDWVWRLHSEGKVIKAADKRLNGEFEEEEMRKLLILGLSCANPDSAERPSMRRVLQILNNEAAPLAVPKVKPTLTFSSDLPLPLTIEDIVSEADQESMCEIKID* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1271 668 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1271 668 CDD STKc_IRAK 358 624 - -
Gso17g1271 668 PANTHER - 41 642 - -
Gso17g1271 668 Gene3D Transferase(Phosphotransferase) domain 1 428 641 - -
Gso17g1271 668 Pfam Legume lectin domain 48 265 IPR001220 GO:0030246
Gso17g1271 668 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 41 642 - -
Gso17g1271 668 Gene3D - 45 282 - -
Gso17g1271 668 SMART serkin_6 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1271 668 SUPERFAMILY Protein kinase-like (PK-like) 333 645 IPR011009 -
Gso17g1271 668 CDD lectin_legume_LecRK_Arcelin_ConA 48 256 IPR001220 GO:0030246
Gso17g1271 668 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Gso17g1271 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 259 IPR013320 -
Gso17g1271 668 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
Gso17g1271 668 Pfam Protein kinase domain 353 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1271 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1271 Gso-Chr17 12460704 12462895 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1271 28 659 Receptor kinase-like Gene Family AT5G55830 55.935 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso17g1271 Pkinase 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1271 - - gmx:100814452 1265.37