Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1270 ATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTTCCTGATGTTCCATTCTTCCAGCAGCAGCGAAGTTCAGAAATCATTGGAACGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTGAGGCTGACTGCTACTGGTGCTAGTGAAAGTTGGACTATGTGTTTCGAGAACATTCCCTTAAAAAGCAAGGCGCCTGTTAAAGAAGATGAAGTTGAGGATGAAATTAAAATTGCCGAGTCATTGCAATTTAACTTCAACACAATACAAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGAGTTGTTTACAGGGGTAGGCTCTCTAATGGGCAGATGATTGCAGTTAAAAAGTTGTCAAGAGATTCTTGCCAAGGAGATACCAAATTTAAGAATGAGGTGCTTTTAGTGGCCAAGCTTCAGCTCCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAATGAAAGGCTACTTGTCTATGAATATGTTCCTAATAAAAGCCTTGATTATTTCACATTTGATCCAAACATGAAAGCACAATTGGATTGGGAAAGTCGTTACAATATCTTCAGTTGTGGTGTACTAGTTCTTGAGATTTTAAGCGGCCAAAAAGACAGTGGCATTCATCATGGGGAGAATGTTGAGGATCTACTAAGTTTCGCATGGAGAAGTTGGAACGAGCAGACAGCTATAAATATTGTAGATCCATCATTAAACAACAATTCACGAAATGAAATGATGAGATGTATTCATATTGGTTTACTTTGTGTTCAAGAAAATTTAGTGGACAGACCAACCACGGCTACCATTATGCTCATGAATGCTAACAATGTAACCCCAACCAAGGACAACACACAGTTGCTAAGAATTTAA 930 0.3903 MLRQIGVDCPRTVPDVPFFQQQRSSEIIGTAIRHPASGYVQGINDLVTPFLRLTATGASESWTMCFENIPLKSKAPVKEDEVEDEIKIAESLQFNFNTIQVATEDFSDSNKLGQGGFGVVYRGRLSNGQMIAVKKLSRDSCQGDTKFKNEVLLVAKLQLRNLVRLLGFCLEGNERLLVYEYVPNKSLDYFTFDPNMKAQLDWESRYNIFSCGVLVLEILSGQKDSGIHHGENVEDLLSFAWRSWNEQTAINIVDPSLNNNSRNEMMRCIHIGLLCVQENLVDRPTTATIMLMNANNVTPTKDNTQLLRI* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1270 309 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 1 70 - -
Gso17g1270 309 Gene3D Transferase(Phosphotransferase) domain 1 181 306 - -
Gso17g1270 309 Pfam Rab-GTPase-TBC domain 3 56 IPR000195 -
Gso17g1270 309 Pfam Protein kinase domain 107 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1270 309 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 207 295 - -
Gso17g1270 309 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 73 208 - -
Gso17g1270 309 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 2 54 IPR035969 -
Gso17g1270 309 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Gso17g1270 309 SUPERFAMILY Protein kinase-like (PK-like) 96 293 IPR011009 -
Gso17g1270 309 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Gso17g1270 309 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 73 208 - -
Gso17g1270 309 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 207 295 - -
Gso17g1270 309 ProSiteProfiles Protein kinase domain profile. 106 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1270 Gso-Chr17 12455562 12458604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1270 186 298 Receptor kinase-like Gene Family AT4G11530 36.441 5.26e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso17g1270 Pkinase 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1270 - - gsj:114393588 624.394