Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1265 ATGAAGTGTTTCTTCTTCAAGGAGAAGTGCAAATCCGCCCCGGAACTGCACAAGAAGAAAACCCCCGCCGTGAACCGCGCCGCAAACTCCACCGGCTCCGTGTCTTCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAGCACAGCTTTAGAGTCTTCACTTTGCAGGAACTGAGAGATGCCACCAACGGCTTCAATAGGATGCTCAAGCTTGGAGAAGGGGGTTTCGGGAGTGTCTATAAAGGATCCATTACGCAACCTGATGGACAAGGTGGTGATCCAATTCCAGTTGCAATCAAAAGGCTCAACACTCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCTGAAGTTCAATTTCTCGGCATTGTTAATCACCCAAATTTGGTTAAACTTTTGGGATACTGCTCCGTGGATGCAGAAAGAGGAATCCAACGGTTGTTAGTGTACGAGTTCATGCCCAACAGGAGCTTGGAGGATCACCTTTTCAACAAAAACTTACCAACCCTGCCTTGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGACTAGCTTATCTACATGAAGGACTGGAAATTCAGGTGATCTACCGAGATTTTAAATCTTCAAATGTTCTATTAGATGCGGACTTCCACCCAAAGCTCTCAGATTTTGGTCTGGCTAGAGAAGGACCACAAGGTGATCAGACTCATGTATCCACTGCGGTAGTTGGAACACAGGGTTATGCTGCACCGGAGTACATTGAAACGGGTCACCTGAAAGTTCAGAGTGACATGTGGAGTTTTGGTGTTGTATTGTATGAGATCCTCACAGGAAGAAGGTCATTGGAAAGAAACCGTCCCACAGCAGAACAAAAGCTTCTAGATTGGGTCAAACAATACCCTGCCGACACCAGCAGATTCGTCATCATAATGGACGCTCGTCTCAGAAACCAGTATTCTCTTCCTGCAGCTCGCAAAATAGCTAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCCTCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAATATTCAGACACTACTTCTCAGGACATTGCTGAATCCTCCTCCTCATCTCGTTCTAAATTGGTCCGAAAAAAGTAA 1134 0.4621 MKCFFFKEKCKSAPELHKKKTPAVNRAANSTGSVSSPKSVKDLYREKEHSFRVFTLQELRDATNGFNRMLKLGEGGFGSVYKGSITQPDGQGGDPIPVAIKRLNTRGFQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDAERGIQRLLVYEFMPNRSLEDHLFNKNLPTLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFVIIMDARLRNQYSLPAARKIAKLADSCLKKNPEDRPSMSQIVESLKQALQYSDTTSQDIAESSSSSRSKLVRKK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1265 377 Pfam Protein tyrosine and serine/threonine kinase 70 348 IPR001245 GO:0004672|GO:0006468
Gso17g1265 377 PANTHER RECEPTOR-LIKE KINASE PLANT 11 356 - -
Gso17g1265 377 MobiDBLite consensus disorder prediction 20 39 - -
Gso17g1265 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Gso17g1265 377 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Gso17g1265 377 Gene3D Phosphorylase Kinase; domain 1 46 152 - -
Gso17g1265 377 PANTHER OS01G0588500 PROTEIN-RELATED 11 356 - -
Gso17g1265 377 CDD STKc_IRAK 72 350 - -
Gso17g1265 377 MobiDBLite consensus disorder prediction 24 38 - -
Gso17g1265 377 ProSiteProfiles Protein kinase domain profile. 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1265 377 SUPERFAMILY Protein kinase-like (PK-like) 48 348 IPR011009 -
Gso17g1265 377 Gene3D Transferase(Phosphotransferase) domain 1 153 374 - -
Gso17g1265 377 MobiDBLite consensus disorder prediction 357 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1265 Gso-Chr17 12409971 12413088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1265 3 348 Glycoside Hydrolase AT3G07070 41.504 1.84e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso17g1265 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1265 - K00924 gmx:100786966 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0582 5 6817525 6820741 Gso17g1265 17 12409971 12413088 GST
Gso1g1736 1 54188650 54191424 Gso17g1265 17 12409971 12413088 PCT
Gso11g0338 11 2831207 2833991 Gso17g1265 17 12409971 12413088 PCT
Gso17g1265 17 12409971 12413088 Gso1g1736 1 54188650 54191424 PCT
Gso17g1265 17 12409971 12413088 Gso11g0338 11 2831207 2833991 PCT