Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1243 ATGGAACTTAGTTTTAAGCACCAACTTGGCCTTGCTTGTGTTGTACTTCTTTTACCTGCATTGTGTAGCTCACAGGACTCTTTTACTGACTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGGACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGTTGTGGTGCATGCTATCAGGCAAGGTGCAAAATACCACAATACTGTGATGAAAATGGAGCATATGTGGTGGTAACAGACTATGGTGAAGGAGACAGAACAGACTTCATAATGAGTCCACGCGCCTACTCGAGATTGGGACGCAACGCGGATGCATCTGCAGAGTTGTTCAAATACGGTGTAGTGGATATTGAATACAGAAGGGTCCCCTGCAGTTACACTGGTTATAACGTGGTGTTTAAGGTTCATGAACACAGCAGAAACCCTGACTACTTTGCTGTTGTGGTTCTCTATGTTGATGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGATTGCCAAGAATGGAAGCCAATGCGCAGGGCATTTGGGGCAATGTTTGACTATAGCAACCCACCAAACGGTGAGATCTACTTGAGGTTCCAAGTGAGTGGCAGTGCAGGGCTTTATTGGGTACAGTCCAAGAATGCTATCTCTGGTGATTGGAAGGCCGGAGCAACATATGACACCAATGTTCAGCTTAATTAG 756 0.459 MELSFKHQLGLACVVLLLPALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKPMRRAFGAMFDYSNPPNGEIYLRFQVSGSAGLYWVQSKNAISGDWKAGATYDTNVQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1243 251 Gene3D - 146 247 IPR036749 -
Gso17g1243 251 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Gso17g1243 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Gso17g1243 251 Gene3D - 19 145 IPR036908 -
Gso17g1243 251 PANTHER EXPANSIN-B3 4 251 - -
Gso17g1243 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gso17g1243 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gso17g1243 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso17g1243 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gso17g1243 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Gso17g1243 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gso17g1243 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Gso17g1243 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Gso17g1243 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Gso17g1243 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1243 Gso-Chr17 12149773 12152416 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1243 1 250 Expansin Gene Family AT4G17030 59.363 9.02e-112 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1243 - - gmx:100779487 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0557 5 6434464 6436746 Gso17g1243 17 12149773 12152416 GST
Gso1g1745 1 54270842 54273486 Gso17g1243 17 12149773 12152416 PCT
Gso11g0329 11 2764906 2767261 Gso17g1243 17 12149773 12152416 PCT
Gso17g1243 17 12149773 12152416 Gso1g1745 1 54270842 54273486 PCT
Gso17g1243 17 12149773 12152416 Gso11g0329 11 2764906 2767261 PCT