Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1237 ATGGAACTAAGTCTTAACCACCAACTTGGGCTTGTTTGTGTAATATTGCTCTTCCCTGCACTATGTAGCTGCAACGAATACTTTACGAACTCCAGAGCAAGCTATTATAATACCCCTGATGGCCTTGGGAATCCAAGGGGAGCTTGTGGCTTTGAAGAATATGGAAGAACGATTAATAATGGAAGTGTGGCTGCTGTATCTGGGCTATGGAGGAATGGTGCTGGCTGTGGCACATGTTATTGGGTAAGGTGCAAAATTCCACAATACTGCGGGAAAGGAGTGCAGGTGGTGGCCACAGACTCTGGTGCGGGAGACGGAACAGACTTCATAATGAGCAAACGTGGATTCTCAGGATTGGCACGCAACGTAGCTGCTTCTAAGGAGCTGTTCAAACGCGGGGTGGTGGATATTGCATTCACAAGGGTTCCCTGTAACTACCCTTCTAACATTAAGCTCCGTGTCCACAAGAGCAGCAAAAACCCTGGCTACTTAGCTGTCCTGCTTCTCAACGTAAATGGAGTACGCGACATCACGGCTGTTGAGATGTGGCAGAGAGGGCAGAAACGTTGGGAGCCACTACGCAGGGTGTATGGGGCAGTGTTTGACTATGCTAACCCACCCAGTGGTGCAATTCTCTTGAGGTTTCAAGTTGGCTATGGATATTGGCTGCCTTCAAATAACCCAATCCCTGCTAATTGGAAGCCTGGTGCTACTTATGACACCAAAGTCCAGATTTATGAGAAAGGAAATTAA 753 0.4768 MELSLNHQLGLVCVILLFPALCSCNEYFTNSRASYYNTPDGLGNPRGACGFEEYGRTINNGSVAAVSGLWRNGAGCGTCYWVRCKIPQYCGKGVQVVATDSGAGDGTDFIMSKRGFSGLARNVAASKELFKRGVVDIAFTRVPCNYPSNIKLRVHKSSKNPGYLAVLLLNVNGVRDITAVEMWQRGQKRWEPLRRVYGAVFDYANPPSGAILLRFQVGYGYWLPSNNPIPANWKPGATYDTKVQIYEKGN* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1237 250 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 245 - -
Gso17g1237 250 Pfam Expansin C-terminal domain 150 230 IPR007117 -
Gso17g1237 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gso17g1237 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso17g1237 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Gso17g1237 250 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Gso17g1237 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Gso17g1237 250 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Gso17g1237 250 SUPERFAMILY PHL pollen allergen 149 240 IPR036749 -
Gso17g1237 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Gso17g1237 250 Pfam Lytic transglycolase 67 137 IPR009009 -
Gso17g1237 250 Gene3D - 146 246 IPR036749 -
Gso17g1237 250 Gene3D - 20 145 IPR036908 -
Gso17g1237 250 PANTHER EXPANSIN-B3 4 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1237 Gso-Chr17 12092787 12095005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1237 9 245 Expansin Gene Family AT4G17030 52.049 1.33e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1237 - - gmx:100776830 529.635