Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1235 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTGCACGCCCGGGCAGAAAATATTGATTATGAGGATCAAAAGGTTTCCAGGGTAAAGAGCATATCATTAAATAAGAACACAGAAGTGAAATTGGTCAAACGAAAGCAAAACTATGGTAATGCTGCATCTGGAGGGTTTGTTCCTGATTATAGTCAAGGATACCGAAAAGTTGTGGATGAAGATACAAGCAATAGATCAAGCTCAGGGTCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCCCAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCCTTCATCTGTTGAGAAGCTCACGAGAGACCTGTGCACTATTCTTCATGAACAGCAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTCGAAAGTGACACACCAATGGTTTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGCTCGTGATGAAGAGTCTGAGGCTAGCTCTCTCTCAGTTGATAATAAACAATGCCTAATGAATGAAGCATATTCATTTTCTAGTACCATTCCTATATATAGTGATCGCAGTAGCATGAACTTCTCATCTCACGGAGTTGAAAAGATCAAAAACTCAGCTGGCCAAATCATGCAACAAGAGAAGCTTGAAAGGGACAAGTCTCAGCTTGAAAAACTACAAGTTCATGGAAATCATGATTCACCATTGTGCTCAATAGATTTAAATGATGTAGTCAACTACGAGGAGTTTATGAGAAACTTGACAAATGAACAGCAGCAGCAATTACTGAAGTATCTCCCAGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAGAAACATGTTCAATAGCTTCCAATTCAAGGAGAACTTAATCTATTTTCAGCAACTTCTCGGGGAAGGAGTCTTTAACATCTCTTTGTTGGGGGCAAAACCTGAAGAATGGAAGACATTAGAAAGGCTTGCATTATCTAATCTGTCAAAGTCGAAATGGGTAGAACACTATAATTTTCTTAAGAAATGTGAAAACAAATCTGGAAAATCTATTGGTTTGGGTTCTACTGCTATGGAATCAAGTAATGTTACAACTGGCAAAAGAATGCGTGAGCATGACAGCCGAAATCAAAATATTCCAGAATTGAAGACAACGATGAGGAGCCCCAAAAGGGTGATCATAAAGCCTCCTAGCTGTGAGGTCAAAGAAGTTGTAGAAGAAGGCTCTAGCTTCAGTCCAAAAAGCTTATTTGCTTTACCCCATGGTGTTGGTGGCTTGCACATGCTGGATTCTTTCAACTTTGTTGGTGAGAGTTCTGAGGATCTGCTTTTAGAGGTGCCTTCTAACAGTTCTTTTCCACAGGCTGAGCTCCTGCACCCATCTTTAAGCTATGGTGCTCGTCAGGTCAGCACCACTAGTAGCTCAGTACACTCACCTGTTACTCATCCTTAA 1635 0.4208 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENIDYEDQKVSRVKSISLNKNTEVKLVKRKQNYGNAASGGFVPDYSQGYRKVVDEDTSNRSSSGSAVSNSESCAQFGGPDASDLTGPAQSVVWDAMVPSKKRTCAGRPKPSSVEKLTRDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSILIRHPSSIARDEESEASSLSVDNKQCLMNEAYSFSSTIPIYSDRSSMNFSSHGVEKIKNSAGQIMQQEKLERDKSQLEKLQVHGNHDSPLCSIDLNDVVNYEEFMRNLTNEQQQQLLKYLPVVDTAKFPDSLRNMFNSFQFKENLIYFQQLLGEGVFNISLLGAKPEEWKTLERLALSNLSKSKWVEHYNFLKKCENKSGKSIGLGSTAMESSNVTTGKRMREHDSRNQNIPELKTTMRSPKRVIIKPPSCEVKEVVEEGSSFSPKSLFALPHGVGGLHMLDSFNFVGESSEDLLLEVPSNSSFPQAELLHPSLSYGARQVSTTSSSVHSPVTHP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1235 544 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gso17g1235 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Gso17g1235 544 Gene3D - 283 391 IPR038108 -
Gso17g1235 544 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Gso17g1235 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gso17g1235 544 MobiDBLite consensus disorder prediction 110 128 - -
Gso17g1235 544 Pfam Asx homology domain 288 367 IPR028020 -
Gso17g1235 544 MobiDBLite consensus disorder prediction 106 134 - -
Gso17g1235 544 MobiDBLite consensus disorder prediction 415 435 - -
Gso17g1235 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gso17g1235 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 544 IPR044589 -
Gso17g1235 544 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 544 - -
Gso17g1235 544 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Gso17g1235 544 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Gso17g1235 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1235 Gso-Chr17 12072623 12078486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1235 1 520 C2C2-Gata Transcription Factor Family AT4G17570 52.897 1.24e-156 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso17g1235 ASXH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1235 - - gmx:100775750 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0551 5 6346030 6351808 Gso17g1235 17 12072623 12078486 GST
Gso1g1747 1 54283213 54289126 Gso17g1235 17 12072623 12078486 PCT
Gso11g0327 11 2749664 2755476 Gso17g1235 17 12072623 12078486 PCT
Gso17g1235 17 12072623 12078486 Gso1g1747 1 54283213 54289126 PCT
Gso17g1235 17 12072623 12078486 Gso11g0327 11 2749664 2755476 PCT