Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1225 ATGTACGGACGGAGTGATTCTTACGAATCCGATTTGGCGCTTCTGGATTCGATTCGCCGCCACTTGCTGGGAGAGTCCGAATTGATATTCGGAGCCCCGAATTTCGGTTCGGGTCGGAGCTCCAGTTTCAGCAGCTTGGACTCGTGTTTGAGTGATGATTGGGGAGAGCTTCCGTTTAAGGAGGACGATTCAGAAGATATGGTGTTGTACGGCGTTCTCCGTGACGCAGTTAATGTGGGGTGGGTCCCATCCCTCGATGCCGGCTCGCCCGAGAGCGTCTCGTCGGGTTTTCCGGCGGTGAAGCTGGAGCCTGATGTCATGCCGGCGTTGATTAATCCGTGTCCGCCTCCGGCGCCGGCGGTGGAGGAGAAGAAGGTTGTTCCGCCGAAGGGGAAGCACTACCGCGGCGTGCGGCAGCGGCCGTGGGGAAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAGAACGGGGCTAGGGTTTGGCTGGGGACGTTTGAGACGGCGGAGGACGCGGCGTTGGCGTACGACCGCGCCGCCTACCGGATGCGAGGGTCGAGGGCGCTGCTGAATTTTCCGTTGAGGGTTAACTCCGGCGAGCCAGATCCGGTGAGGGTGACGTCGAAGCGGTCGTCGTCGCCGGAAAGTATGGCGGCGGCGGCGCCGAAGAGAAAGAAAGTTATGGTGGTGGGGACGGTGCAAGAGCAAGTGGGGAGTCAAGTGGTGGAGTGTACACGTGGCGAACAGTTATTGGTTAGCTGA 756 0.6058 MYGRSDSYESDLALLDSIRRHLLGESELIFGAPNFGSGRSSSFSSLDSCLSDDWGELPFKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGFPAVKLEPDVMPALINPCPPPAPAVEEKKVVPPKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESMAAAAPKRKKVMVVGTVQEQVGSQVVECTRGEQLLVS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1225 251 Gene3D AP2/ERF domain 132 194 IPR036955 GO:0003700|GO:0006355
Gso17g1225 251 PANTHER BNAANNG21280D PROTEIN 28 238 - -
Gso17g1225 251 CDD AP2 132 191 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 SMART rav1_2 133 197 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 ProSiteProfiles AP2/ERF domain profile. 133 191 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 SUPERFAMILY DNA-binding domain 133 193 IPR016177 GO:0003677
Gso17g1225 251 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 PANTHER DNA-BINDING DOMAIN 28 238 IPR044808 GO:0003700|GO:0009873
Gso17g1225 251 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Gso17g1225 251 MobiDBLite consensus disorder prediction 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1225 Gso-Chr17 11927259 11928412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1225 9 250 AP2-EREBP Transcription Factor Family AT4G17500 55.056 8.40e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1225 AP2 9.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1225 K09286 - gmx:100817097 431.795