Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1224 ATGGCGAACGCAGCTGAAGTTTCAGCCTTGAACCGCATCAAACTGCATCTTTTGGGTGAACTCTCTCCACTGGCCACTCCCCTAAACTATTTTGATGAATCAAACCCTAGCCCCTCTGAATCTTCCAATTCCCAATCTTCTTCTGTTTCTCTTAACCACTACTTCACTGACCTCTTCGAATTCGACTCCAAACCCCAAATAATCGACCTCCAAACTCCCAAAACACTAACTTCAGCTCAGAAGAAACCTCAATTGAATCGGAAACCGTCGCTGCTAATCGCTGTTCCAAAGAAGACCGAGTGGATCCAGTTCGGGAGCCCGGATCCGAACCCGGTGATGGCTGCGCCGGAGAACCTGCCGCAGAAGAATCACTACAGAGGTGTCCGGCAGCGGCCCTGGGGCAAATTCGCCGCCGAGATCCGCGACCCGAACAAGCGCGGCTCTAGGGTTTGGCTCGGAACCTTCGACACCGCCGTCGAAGCCGCCAAGGCCTACGACCGAGCCGCCTTCAGACTCCGCGGCTCCAAGGCCATCCTCAACTTCCCCCTCGAAGTTAGCGCCGTGGCGGAGACCGTCTCCGTCGCCGCCGCCGAAGGCAACGTCGAGAGAAAGCGCCGCCGCGAGGAAGAGGAGGTGGTGGTGGAGGAAGTAAAGCCGGTGGTGAAGAAGGAAAAGATAACGGAACAGGATGTGAGTTGTTTTAGGGAGATGCCGTTAACGCCGTCTATGTGGACCGGGTTCTGGGACAGTGACGTCAAGGACATTTTCAACGTTCCGCCGTTGTCGCCGTTATCTCCTTTTGGATTTTCACCGCTCGTGGCGGTGTGA 828 0.5556 MANAAEVSALNRIKLHLLGELSPLATPLNYFDESNPSPSESSNSQSSSVSLNHYFTDLFEFDSKPQIIDLQTPKTLTSAQKKPQLNRKPSLLIAVPKKTEWIQFGSPDPNPVMAAPENLPQKNHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAVEAAKAYDRAAFRLRGSKAILNFPLEVSAVAETVSVAAAEGNVERKRRREEEEVVVEEVKPVVKKEKITEQDVSCFREMPLTPSMWTGFWDSDVKDIFNVPPLSPLSPFGFSPLVAV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1224 275 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Gso17g1224 275 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Gso17g1224 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 262 - -
Gso17g1224 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 262 - -
Gso17g1224 275 Gene3D AP2/ERF domain 123 184 IPR036955 GO:0003700|GO:0006355
Gso17g1224 275 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Gso17g1224 275 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Gso17g1224 275 SUPERFAMILY DNA-binding domain 124 184 IPR016177 GO:0003677
Gso17g1224 275 SMART rav1_2 124 188 IPR001471 GO:0003700|GO:0006355
Gso17g1224 275 ProSiteProfiles AP2/ERF domain profile. 124 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1224 Gso-Chr17 11912890 11913922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1224 1 275 AP2-EREBP Transcription Factor Family AT5G47230 46.945 2.50e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1224 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1224 K09286 - gmx:100816039 476.092