Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1220 ATGCATATAGAGGAATTGGAGGGAGTTGAGGTTTTAGAAGGTGTGGAGGAAGGAGGATCGAGGTTTGTGGGTGGTTATGATGCGAAAAGGGTGCTGGTTGGAGCAGGCGCTCGTGCGCTTTTCTATCCAACCCTGTTTTACAATGTCGTAAGGAATAAGATTCAGACCGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATAGATGTTCCCCACTTAAAGGAGCTCGGTGTTCGTGGGGTTATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACAGCATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCTTCTCTGCATGACATTTGCCGTGCTGTGGACTTCATACATGAAAATGCATTGTCGGGACGAACTACATATGTCCATTGCAAAGCTGGACGTGGTCGCAGCACGACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGATGCTGCATATGCTTATGTGAAATCAATTCGACCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAAGAATACTATTACCATCTTATGGTTAGGAGGGCTGTTGGATGTGCTCCCACAGCCAATCTATTAGTAAAGGCTTCTCAGACGGCAGCAGGTTCACGAGATCTTGTGATGTTTGATGACAATTCTGTAGTCATGGTAACAGAGTCAGATCTAGAAGGTTACGACCCAAGTAGTCAATCAGCCATGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTATATCGTGTACGAGTTGCTGGACAGGCAGCACTGGCGAGAATATCATGCCTTTGGCTGCGATATGCTACTACCGACCAGAAGATTTCCTCGGAGAAACTGAGCAGCAGGGAAAGCAGTTGCTCAATCCGGGCTAATCACCTGGGAGAAATTAGTGTTGATATCCACGTGTACTGA 987 0.4498 MHIEELEGVEVLEGVEEGGSRFVGGYDAKRVLVGAGARALFYPTLFYNVVRNKIQTEFRWWDKVDEFILLGAVPFPIDVPHLKELGVRGVITLNESYETLVPTALYYAHGIDHLVIPTRDYCFAPSLHDICRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKMMTPDAAYAYVKSIRPRVLLASSQWQAVQEYYYHLMVRRAVGCAPTANLLVKASQTAAGSRDLVMFDDNSVVMVTESDLEGYDPSSQSAMASEIWADLSVVYRVRVAGQAALARISCLWLRYATTDQKISSEKLSSRESSCSIRANHLGEISVDIHVY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1220 328 PANTHER - 1 328 - -
Gso17g1220 328 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Gso17g1220 328 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 328 - -
Gso17g1220 328 CDD PTPMT1 60 202 IPR044596 GO:0004721
Gso17g1220 328 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Gso17g1220 328 Gene3D Protein tyrosine phosphatase superfamily 60 211 IPR029021 -
Gso17g1220 328 Pfam Dual specificity phosphatase, catalytic domain 82 202 IPR000340 GO:0008138|GO:0016311
Gso17g1220 328 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Gso17g1220 328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 205 IPR029021 -
Gso17g1220 328 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1220 Gso-Chr17 11845011 11849845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1220 29 328 Protein tyrosine phosphatase (PTP) family AT2G35680 63.548 2.58e-131 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1220 - - gmx:100813907 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0532 5 5960631 5965662 Gso17g1220 17 11845011 11849845 GST