Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1218 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTTTAAGCCTCAACTTCCCTCATCACAATACCCCAAATCCTCAACATCCGAGTCTCATGTCATCCTCTACTCATTCCTCTTCTCCTTCTGGTTGCAACCCTCAAAAACCCTCTTGGAACGAGGCTTTCACTTCTTCGGATCGAAACTCCGACACATGCAGAGGCGAAACGCGATCGTTCCTGCGCGGAATCGACGTGAACCGGTTACCTTCCGCCGTGGACACCGAGGAGGAAACGGGAGTTTCGTCTCCGAACAGCACCGTCTCTAGCGTGAGTGGAAAACGTAGCGAGAGAGAAGAACCGAACGGCGAAGAACACGACATGGACAGAGCCTGTTCCCGCGGAATCAGCGACGAGGAAGACGCTGAAACCGCAAGGAAAAAACTTAGACTCTCCAAAGACCAATCCGCTATACTCGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCCAAGCAAAAATTGGCACTGGCGAAACAGCTAGGACTTCGACCTAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACCGAGGTGGACTGCGAAGTATTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCACAGTTTTACATGCAAATGACCCCACCCACGACGCTCACCATGTGCCCCTCTTGCGAGCGTGTGGCTGTTCCGTCCTCCGCCGTCGATGCTGCCACGCGTCATCATCCCATGGCCCAGGCCCAGGCCCAGGCCCAGATTCGGCACAGGCCCATTGGCCCGTGGGCTTCCGCCTCTCCCATTACGCACCGGCCGTTTGATGTCTTCCACCACTGA 900 0.5333 MMVQKEDLGLSLSLNFPHHNTPNPQHPSLMSSSTHSSSPSGCNPQKPSWNEAFTSSDRNSDTCRGETRSFLRGIDVNRLPSAVDTEEETGVSSPNSTVSSVSGKRSEREEPNGEEHDMDRACSRGISDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAQAQAQIRHRPIGPWASASPITHRPFDVFHH* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1218 299 MobiDBLite consensus disorder prediction 103 138 - -
Gso17g1218 299 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Gso17g1218 299 Pfam HD-ZIP protein N terminus 2 109 IPR006712 GO:0005634
Gso17g1218 299 MobiDBLite consensus disorder prediction 1 65 - -
Gso17g1218 299 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 291 - -
Gso17g1218 299 MobiDBLite consensus disorder prediction 86 102 - -
Gso17g1218 299 SUPERFAMILY Homeodomain-like 125 193 IPR009057 -
Gso17g1218 299 Gene3D - 140 190 - -
Gso17g1218 299 PANTHER - 4 291 - -
Gso17g1218 299 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Gso17g1218 299 Coils Coil 191 228 - -
Gso17g1218 299 MobiDBLite consensus disorder prediction 81 138 - -
Gso17g1218 299 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Gso17g1218 299 CDD homeodomain 136 193 IPR001356 GO:0003677
Gso17g1218 299 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Gso17g1218 299 MobiDBLite consensus disorder prediction 14 60 - -
Gso17g1218 299 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Gso17g1218 299 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Gso17g1218 299 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Gso17g1218 299 SMART HOX_1 134 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1218 Gso-Chr17 11831555 11833755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1218 1 291 Homeobox Transcription Factor Family AT4G16780 65.068 2.75e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso17g1218 HD-ZIP_N 8.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1218 K09338 - gmx:100813367 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1764 1 54458963 54460808 Gso17g1218 17 11831555 11833755 PCT
Gso11g0310 11 2610865 2612823 Gso17g1218 17 11831555 11833755 PCT
Gso17g1218 17 11831555 11833755 Gso1g1764 1 54458963 54460808 PCT
Gso17g1218 17 11831555 11833755 Gso11g0310 11 2610865 2612823 PCT