Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1216 ATGACGCGGCGTTGCTCGCATTGCAGCCACAATGGGCACAACTCAAGAACTTGCCCTAACCGCGGGGTGAAGCTCTTCGGGGTCCGATTAACCGATGGGTCGATCCGGAAGAGTGCTAGCATGGGCAATCTAACCCACTATGCCGGTTCCGGGTCGGGTCCACTCCATACCGGGTTGAATAACCCCGGTTCGCCCGGGGAAACCCCCGATCATGCCGCCGCAGTCGCCGACGGTTACTTGTCCGAGGACTTCGTTCCCGGGTCTTCTTCTAGCTCCCGTGAAAGAAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTAGGATTGCAGAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCTAGCCATGCTCAGAAATATTTCATCAGGCAGAGCAATGTGTCCAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGACACTGCAATGGTACAGCAAGACTTCTTGTCTGCTAATCAGTTACCCACTGAAACAGAAGGCAATAACCCCTTGCCAGCTCCTCCTCCCCTCGACGAAGAGTGCGAATCCATGGATTCCACAAACTCAAATGATGGAGAGCCTGCCCCATCAAAGCCTGAAAACACACAGTCATCTTATCCAATGTTATATCCTGCATATTATTCTCCGGTGTTCCCGTTTCCTCTGCCCTATTGGTCAGGATACAGTCCAGAGTCCACCAAGAAGGAGGAGACACATGAAGTACTGAAGCCAACTGCAGTTCATTCTAAAAGCCCTATCAATGTTGATGAACTGGTTGGCATTTCAAAATTGAGTTTAGGGGAGTCTATTGGTGACTCTGGTCCCTCCTCTCTGTCTCGAAAACTTATCGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACACCGACATGTGGCAGTTCAAATGGCAGTGCCATCCATGCAGTTTAA 1002 0.499 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHTGLNNPGSPGETPDHAAAVADGYLSEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADTAMVQQDFLSANQLPTETEGNNPLPAPPPLDEECESMDSTNSNDGEPAPSKPENTQSSYPMLYPAYYSPVFPFPLPYWSGYSPESTKKEETHEVLKPTAVHSKSPINVDELVGISKLSLGESIGDSGPSSLSRKLIEEGPSRQSAFHATPTCGSSNGSAIHAV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1216 333 MobiDBLite consensus disorder prediction 314 328 - -
Gso17g1216 333 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Gso17g1216 333 CDD SANT 100 145 IPR001005 -
Gso17g1216 333 PANTHER BNAC01G21010D PROTEIN 1 325 - -
Gso17g1216 333 SMART sant 97 147 IPR001005 -
Gso17g1216 333 MobiDBLite consensus disorder prediction 184 226 - -
Gso17g1216 333 MobiDBLite consensus disorder prediction 210 226 - -
Gso17g1216 333 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Gso17g1216 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Gso17g1216 333 MobiDBLite consensus disorder prediction 292 333 - -
Gso17g1216 333 Gene3D - 99 151 - -
Gso17g1216 333 MobiDBLite consensus disorder prediction 1 21 - -
Gso17g1216 333 PANTHER TRANSCRIPTION FACTOR KUA1 1 325 - -
Gso17g1216 333 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Gso17g1216 333 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Gso17g1216 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1216 Gso-Chr17 11757631 11761668 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso17g1216 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1216 - - gmx:780535 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0528 5 5856768 5861279 Gso17g1216 17 11757631 11761668 GST