Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1215 ATGGTCATGGAAGAATCTAACCCTTTAGACAATGAAGTTCAACCAACCACTTCATCATCCTCTTTCACCATTACTACTCCCTCTACCTCCTCTTCCTCCTCCATAGAAGAAGCCACTAACACTACTACTAAGGAGAAAAAGAAGAAGAGAGCCATTAGTAATATTGAAGGGAAGCACCCTACGTATAGAGGAGTACGTATGCGTCAATGGGGCAAATGGGTATCCGAAATTAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGAACTTTTCCCACTCCCGATATGGCGGCTCGAGCCCATGATGTGGCGGCTCTCACGATCAAAGGCAGCTCGGCTTACCTCAATTTCCCCGAATTAGCCGCCAAGCTGCCCCGCCCCGCCAGCACCTCCCCCAAGGACATCCAAGCTGCGGCGGCTAAAGCCTCCGCCTTGGATTTCGGTCACCAAAGCCATGAAGCCGAATCCGAGCTGAGCCAAGCCGTTTCCTCCTCAATCCAAACACAATCATCATCATCATCATCCAATTCATCATTGAAGGGTGTGGATGACACATTCTTGGACCTTCCTGATCTCTCTCTTGACTTGAGCCATGGAGCCGATGAGTTTCATTATTCATCGGCTTGGCTTGTAGCCGGAGCCGAACATATAGAGCTGGGTTTCCGGCTTGAGGAACCTTTTCTTTGGGAATCATATTAA 699 0.4878 MVMEESNPLDNEVQPTTSSSSFTITTPSTSSSSSIEEATNTTTKEKKKKRAISNIEGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSSAYLNFPELAAKLPRPASTSPKDIQAAAAKASALDFGHQSHEAESELSQAVSSSIQTQSSSSSSNSSLKGVDDTFLDLPDLSLDLSHGADEFHYSSAWLVAGAEHIELGFRLEEPFLWESY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1215 232 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Gso17g1215 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF039-LIKE 11 230 - -
Gso17g1215 232 MobiDBLite consensus disorder prediction 40 56 - -
Gso17g1215 232 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Gso17g1215 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 230 - -
Gso17g1215 232 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Gso17g1215 232 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Gso17g1215 232 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Gso17g1215 232 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Gso17g1215 232 MobiDBLite consensus disorder prediction 156 180 - -
Gso17g1215 232 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Gso17g1215 232 MobiDBLite consensus disorder prediction 1 56 - -
Gso17g1215 232 MobiDBLite consensus disorder prediction 9 39 - -
Gso17g1215 232 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1215 Gso-Chr17 11731769 11733126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1215 49 228 AP2-EREBP Transcription Factor Family AT2G44940 48.804 3.96e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1215 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1215 - - gmx:100812293 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0526 5 5824387 5825592 Gso17g1215 17 11731769 11733126 GST
Gso11g0306 11 2571983 2572781 Gso17g1215 17 11731769 11733126 PCT
Gso17g1215 17 11731769 11733126 Gso11g0306 11 2571983 2572781 PCT