Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1213 ATGGCACCAAGGGTTAATGGTGGAACAATTACAAGCAAGAGAGCAATGAACAGAGGAGCATGGACCCCAGAGGAAGACAGAAAGCTAGCCCAGTGCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTGTTGCAATCAAATCAGGTTTAAATAGGTGTGGGAAGAGTTGCAGGCTGAGATGGTTGAACTATCTGAGACCGAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAGACTTTTGGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAGAAGCCAGAAAGTTCCACGAGACACGAAATTATTGGCCAGAATGATGCTGGGGACAACCGTGCAATGTCAGAGAACGAGGTGGAAATTAATGAAAGTAGTAACTTAGATGTTAGTAGTTTTGACGTGAACGAATTTTTCAACTTCTCTGAGGAATCCTTTGGGTTTGATTGGCTGAACAAGTACTTGGAACTTGACCAGATTCCTCAGAGCACTGAATGA 594 0.4242 MAPRVNGGTITSKRAMNRGAWTPEEDRKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKVEKPESSTRHEIIGQNDAGDNRAMSENEVEINESSNLDVSSFDVNEFFNFSEESFGFDWLNKYLELDQIPQSTE* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1213 197 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Gso17g1213 197 CDD SANT 20 65 IPR001005 -
Gso17g1213 197 SMART sant 70 118 IPR001005 -
Gso17g1213 197 SMART sant 17 67 IPR001005 -
Gso17g1213 197 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Gso17g1213 197 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gso17g1213 197 Gene3D - 10 71 - -
Gso17g1213 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Gso17g1213 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 197 - -
Gso17g1213 197 CDD SANT 75 116 IPR001005 -
Gso17g1213 197 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gso17g1213 197 Gene3D - 74 140 - -
Gso17g1213 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Gso17g1213 197 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g1213 197 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 197 - -
Gso17g1213 197 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1213 Gso-Chr17 11673350 11675539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1213 13 148 MYB Transcription Factor Family AT5G52600 58.394 3.04e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1213 Myb_DNA-binding 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1213 K09422 - gmx:100811754 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0524 5 5772079 5774477 Gso17g1213 17 11673350 11675539 GST
Gso1g1767 1 54482439 54483434 Gso17g1213 17 11673350 11675539 PCT
Gso11g0304 11 2559479 2561079 Gso17g1213 17 11673350 11675539 PCT
Gso17g1213 17 11673350 11675539 Gso1g1767 1 54482439 54483434 PCT
Gso17g1213 17 11673350 11675539 Gso11g0304 11 2559479 2561079 PCT