Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso17g1202 | ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTTGGTGGGCACATGAAGGCTCACCTTGCTTCTCTCCCTCTCCCTCTCCCTCCAAAGCTTCACTCTTGTTTCTCTTCCTCTGACTCAGAACAAGAACAATCTTTAAGGGAGAATCCTAAGAAAACCTTGAGGATTCTGGATCCTGAAGACAGAGAGAGCGAGACAGAGTCTAATAAGAACCCGACTCGTCAACGATCCAAGCGCAACTGGAAATCTACCATGCCCAAGCTCAGCCTCGGACACCCCGAAGCCGAACCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACCTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGGAACACAAACTCGCCAATGCAGGTCCACCCAAGACTCGCTGCAGCAGCGGATCAGAGATCAAGCTCAAGAACAAAGTCCGCTCCAAGCACCTCTGCCACGCTTGTCACAAATCCTTTCGATCCTCTCGCGCTCTTGGGAGCCACAGAACCCTGTGCTCTCCCCGTCAGGAAGCCCAAAATAACAGCATCATTAGTAATAACAACATTAAGGTTTTTGAATGCCCCTTCTGTTACAAGCTGTTTGGTTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCTTCCTCTTCAACCGTTAATCATTCTGTCAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCTGCTCCGGCCGAAGACGACGATCTTAGCGTTGTTTCTGATGCCTAA | 792 | 0.5063 | MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLPLPPKLHSCFSSSDSEQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSRALGSHRTLCSPRQEAQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRSHLIPSSSSTVNHSVKLKQSFIDLNLPAPAEDDDLSVVSDA* | 264 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso17g1202 | 263 | SUPERFAMILY | beta-beta-alpha zinc fingers | 200 | 225 | IPR036236 | - | |
Gso17g1202 | 263 | Gene3D | Classic Zinc Finger | 157 | 224 | - | - | |
Gso17g1202 | 263 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Gso17g1202 | 263 | MobiDBLite | consensus disorder prediction | 51 | 81 | - | - | |
Gso17g1202 | 263 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 263 | IPR044303 | GO:0006355 | |
Gso17g1202 | 263 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
Gso17g1202 | 263 | SMART | c2h2final6 | 160 | 180 | IPR013087 | - | |
Gso17g1202 | 263 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Gso17g1202 | 263 | SMART | c2h2final6 | 202 | 224 | IPR013087 | - | |
Gso17g1202 | 263 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 263 | - | - | |
Gso17g1202 | 263 | Pfam | C2H2-type zinc finger | 201 | 225 | - | - | |
Gso17g1202 | 263 | Pfam | C2H2-type zinc finger | 3 | 28 | - | - | |
Gso17g1202 | 263 | Pfam | C2H2-type zinc finger | 160 | 179 | - | - | |
Gso17g1202 | 263 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 179 | IPR036236 | - | |
Gso17g1202 | 263 | MobiDBLite | consensus disorder prediction | 40 | 112 | - | - | |
Gso17g1202 | 263 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 204 | 224 | IPR013087 | - | |
Gso17g1202 | 263 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 202 | 224 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso17g1202 | Gso-Chr17 | 11557489 | 11558743 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso17g1202 | 1 | 260 | C2H2 Transcription Factor Family | AT3G60580 | 36.027 | 6.74e-46 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso17g1202 | zf-C2H2_6 | 1.3e-10 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso17g1202 | - | - | gmx:100807121 | 523.087 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso5g0507 | 5 | 5554481 | 5556003 | Gso17g1202 | 17 | 11557489 | 11558743 | GST | |
Gso1g1780 | 1 | 54597238 | 54598478 | Gso17g1202 | 17 | 11557489 | 11558743 | PCT | |
Gso11g0291 | 11 | 2447480 | 2448810 | Gso17g1202 | 17 | 11557489 | 11558743 | PCT | |
Gso17g1202 | 17 | 11557489 | 11558743 | Gso1g1780 | 1 | 54597238 | 54598478 | PCT | |
Gso17g1202 | 17 | 11557489 | 11558743 | Gso11g0291 | 11 | 2447480 | 2448810 | PCT |