Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1202 ATGGATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCAGCAATGGCAGAGCCCTTGGTGGGCACATGAAGGCTCACCTTGCTTCTCTCCCTCTCCCTCTCCCTCCAAAGCTTCACTCTTGTTTCTCTTCCTCTGACTCAGAACAAGAACAATCTTTAAGGGAGAATCCTAAGAAAACCTTGAGGATTCTGGATCCTGAAGACAGAGAGAGCGAGACAGAGTCTAATAAGAACCCGACTCGTCAACGATCCAAGCGCAACTGGAAATCTACCATGCCCAAGCTCAGCCTCGGACACCCCGAAGCCGAACCTCTCAGCTCCGTCTCCGACACCTCCCCCGAAGAAGACCTCGCCATGTGCCTCATGATGCTCTCCCGCGACACGTGGCAGGAACACAAACTCGCCAATGCAGGTCCACCCAAGACTCGCTGCAGCAGCGGATCAGAGATCAAGCTCAAGAACAAAGTCCGCTCCAAGCACCTCTGCCACGCTTGTCACAAATCCTTTCGATCCTCTCGCGCTCTTGGGAGCCACAGAACCCTGTGCTCTCCCCGTCAGGAAGCCCAAAATAACAGCATCATTAGTAATAACAACATTAAGGTTTTTGAATGCCCCTTCTGTTACAAGCTGTTTGGTTCTGGCCAAGCGCTCGGTGGACACAAGAGATCTCACCTAATTCCTTCTTCCTCTTCAACCGTTAATCATTCTGTCAAGTTGAAACAGAGCTTCATAGATCTCAACTTGCCTGCTCCGGCCGAAGACGACGATCTTAGCGTTGTTTCTGATGCCTAA 792 0.5063 MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLPLPPKLHSCFSSSDSEQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSRALGSHRTLCSPRQEAQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRSHLIPSSSSTVNHSVKLKQSFIDLNLPAPAEDDDLSVVSDA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1202 263 SUPERFAMILY beta-beta-alpha zinc fingers 200 225 IPR036236 -
Gso17g1202 263 Gene3D Classic Zinc Finger 157 224 - -
Gso17g1202 263 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso17g1202 263 MobiDBLite consensus disorder prediction 51 81 - -
Gso17g1202 263 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 263 IPR044303 GO:0006355
Gso17g1202 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso17g1202 263 SMART c2h2final6 160 180 IPR013087 -
Gso17g1202 263 SMART c2h2final6 4 26 IPR013087 -
Gso17g1202 263 SMART c2h2final6 202 224 IPR013087 -
Gso17g1202 263 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 263 - -
Gso17g1202 263 Pfam C2H2-type zinc finger 201 225 - -
Gso17g1202 263 Pfam C2H2-type zinc finger 3 28 - -
Gso17g1202 263 Pfam C2H2-type zinc finger 160 179 - -
Gso17g1202 263 SUPERFAMILY beta-beta-alpha zinc fingers 3 179 IPR036236 -
Gso17g1202 263 MobiDBLite consensus disorder prediction 40 112 - -
Gso17g1202 263 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Gso17g1202 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 224 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1202 Gso-Chr17 11557489 11558743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1202 1 260 C2H2 Transcription Factor Family AT3G60580 36.027 6.74e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g1202 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1202 - - gmx:100807121 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0507 5 5554481 5556003 Gso17g1202 17 11557489 11558743 GST
Gso1g1780 1 54597238 54598478 Gso17g1202 17 11557489 11558743 PCT
Gso11g0291 11 2447480 2448810 Gso17g1202 17 11557489 11558743 PCT
Gso17g1202 17 11557489 11558743 Gso1g1780 1 54597238 54598478 PCT
Gso17g1202 17 11557489 11558743 Gso11g0291 11 2447480 2448810 PCT