Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1197 ATGGCTCCTCTCTTCATCTCAATGCAAATGCTTCTTCTGGTTTTCACTTGCATATTATTGCATGTCACATGCACAACTTACCACGACAGCACCCCCAAAACAGTGCCTTCTACAAACTCCTCTAAGTGGGTGGGGCCCATCGGACACCGAGTAATCACCGTTGACGTTAACGGCGGAGCCCATTTCCGCTCAGTCAAAGCCGCCGTCAATGCTGTCCCGGAGAACAACAGAATGAACGTCCTTATTCAAATAAGCGCCGGATATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTACGTTTCAAGGTGCGGGAAGGGATGTGACGGTGATAGAATGGCATGATAGGGCTAGTGACCCTGGTCCCAACGGCCAACAACTGCGTACTTACAGAACTGCTTCTGTTACTGTTTTTGCCAATTATTTCTCTGCCAGGAATATCAGCTTCAAGAACACAGCACCGGCACCCATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATATCCGGAGACAAAGCCTATTTCTCCGGCTGTGGATTCTACGGTGCACAAGACACTCTTTGCGACGACGCTGGCCGCCATTATTTCAAAGAATGTTACATCGAGGGCTCCATAGATTTCATCTTTGGCAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCGACGAGGTTTGGGTCAATAGCAGCCCAAGACAGGCAATTCCCATACGAGAAGACGGGCTTCTCATTCGTACGGTGCAAGGTGACAGGAACAGGCCCAATTTACGTGGGCCGTGCAATGGGCCAGTACTCCAGGATTGTCTATGCCTACACTTACTTTGACGGCATAGTTGCACATGGTGGTTGGGATGATATTGATTGGAACACTTCCAACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGAGCAGCGGCTATACGTGGAGTCCCATTGGCCCAAGAGCTAGATTTCGAATCTGCACATCCATTCCTTGTCAAGAGTTTTGTCAATGGAAGACACTGGATTGCACCCTCTGATGCTTAG 1065 0.4986 MAPLFISMQMLLLVFTCILLHVTCTTYHDSTPKTVPSTNSSKWVGPIGHRVITVDVNGGAHFRSVKAAVNAVPENNRMNVLIQISAGYYIEKVVVPVTKPYITFQGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRQFPYEKTGFSFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDGIVAHGGWDDIDWNTSNNNKTVFFGVYKCWGPGAAAIRGVPLAQELDFESAHPFLVKSFVNGRHWIAPSDA* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1197 354 PANTHER PECTINESTERASE 68-RELATED 16 353 - -
Gso17g1197 354 ProSitePatterns Pectinesterase signature 2. 206 215 IPR033131 -
Gso17g1197 354 Gene3D - 48 353 IPR012334 -
Gso17g1197 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 353 - -
Gso17g1197 354 Pfam Pectinesterase 52 345 IPR000070 GO:0030599|GO:0042545
Gso17g1197 354 SUPERFAMILY Pectin lyase-like 49 351 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1197 Gso-Chr17 11521009 11524578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1197 4 354 Carbohydrate Esterase AT5G47500 72.365 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1197 - - gmx:100796327 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0287 11 2415448 2418804 Gso17g1197 17 11521009 11524578 PCT