Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1167 ATGTCATCCTCTTCCAGCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACCGTCCTCGCTGTAAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTCCCAGTGAACATGCGAGGGTTGCTTATGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTCAGTGCGTCACATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCACAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAATCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGATGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCGGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4846 MSSSSSTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSHNLLEEIPNPTPNFLMNQTNFSASHEFSMPARTAADELPRPPITNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQDGEEVLMKDGFYASANVGVSPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1167 215 SUPERFAMILY HMG-box 124 172 IPR036910 -
Gso17g1167 215 PANTHER PROTEIN YABBY 6-RELATED 1 213 IPR006780 GO:0007275
Gso17g1167 215 Gene3D High mobility group box domain 122 175 IPR036910 -
Gso17g1167 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Gso17g1167 215 PANTHER PROTEIN YABBY 4 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1167 Gso-Chr17 11181146 11184764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1167 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 2.83e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso17g1167 YABBY 8.6e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1167 K25796 - gmx:100798441 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0476 5 5073869 5077246 Gso17g1167 17 11181146 11184764 GST