Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1165 ATGAACACGTTTTCACATGTACCACCAGGCTTTCGATTTCATCCGACCGATGAAGAACTTGTCGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAATTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTATTTCTTTAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGAATGACAACAATGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGGCGCAGTATTTCTCTGCCTTATGCATCATACCACCACCACCACCACCCTAGCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCACAACTTGAAAGCCCCAAAGTTACTCAATCAGCATGCTCAGTTGTCCCTTATGGCTATGAAAACAACAACAACAACAACAACAACAACAACAATGGAAGCACCTTGCAGTTCTCATCACTCACTCAGGAAGAACAGTTACAATATTGCAATAACCAACAAAGTCACCATTCTCTCTATGGCAGCAATGATCATGCGGTTGACCAGGTCACAGATTGGCGTGTACTTGACAAATATGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTCGTTTCCAAGGAAACCAGTTATTCCAATGCACCCATTTTCAATGTGACGGAACAAGTTTCTGTGGTTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA 1104 0.4284 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTSQEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDLESPRRSISLPYASYHHHHHPSCKPELMELQYNNIPHDAFLQLPQLESPKVTQSACSVVPYGYENNNNNNNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKYVASQLSHNNQDVVSKETSYSNAPIFNVTEQVSVVANGSKKEQVSQEYASTSTSSYQIDLWK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1165 367 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gso17g1165 367 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Gso17g1165 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 356 - -
Gso17g1165 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 356 - -
Gso17g1165 367 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gso17g1165 367 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1165 Gso-Chr17 11154422 11160787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1165 1 367 NAC Transcription Factor Family AT1G12260 54.499 1.63e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso17g1165 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1165 - - gmx:100797916 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0473 5 5034497 5041140 Gso17g1165 17 11154422 11160787 GST
Gso11g0270 11 2241671 2246071 Gso17g1165 17 11154422 11160787 PCT
Gso17g1165 17 11154422 11160787 Gso11g0270 11 2241671 2246071 PCT